1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...acactcatctatcttgatttgtctagttgaattattgaaattgtaaagttggagtttttaatggatctctactgtgtttggtcgttatgatctgagacagATACAAGAATCAGACAGTTGCTATAAAGATAGTTCACAGAGGAGAAACACCAGAAGAGATTGCTAAAAGAGATTCAAGATTCCTTAGAGAAGTAGAAATG
species | Arabidopsis thaliana |
transcript | AT5G50180.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTGGTCCAAAGATTGGTGAAGGAGCTCATGCTAAAGTCTATGAGGGAAA ATACAAGAATCAGACAGTTGCTATAAAGATAGTTCACAGAGGAGAAACACCEST: gi|86054520|gb|DR350277.1|DR350277
genomic: GTTGGTCCAAAGATTGGTGAAGGAGCTCATGCTAAAGTCTATGAGGGAAAgtaagctcct ... tctgagacagATACAAGAATCAGACAGTTGCTATAAAGATAGTTCACAGAGGAGAAACACC
EST: GTTGGTCCAAAGATTGGTGAAGGAGCTCATGCTAAAGTCTATGAGGGAAA ATACAAGAATCAGACAGTTGCTATAAAGATAGTTCACAGAGGAGAAACACC
genomic: GTTGGTCCAAAGATTGGTGAAGGAGCTCATGCTAAAGTCTATGAGGGAAAgtaagctcct ... tctgagacagATACAAGAATCAGACAGTTGCTATAAAGATAGTTCACAGAGGAGAAACACC
aagttggagtttttaatggatctctactgtgtttggtcgttatgatctgagacagATACAAGAATCAGACAGTTGCTATAAAGATAGTTCACAGAGGAGAAACACCAGAAGAGATTGCTAAAAGAGATTCAAGATTCCTTAGAGAAGTAGAAATG
ttttaat putative branch site (score: 3)
agtttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acactcatctatcttgatttgtctagttgaattattgaaattgtaaagttggagtttttaatggatctctactgtgtttggtcgttatgatctgagacagATACAAGAATCAGACAGTTGCTATAAAGATAGTTCACAGAGGAGAAACACCAGAAGAGATTGCTAAAAGAGATTCAAGATTCCTTAGAGAAGTAGAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
acactca
- - - - - - - -gatttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgg