1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tacagagctaatttgtttttatctttaacgagtgatattgtcattggatagttttgactgatctttgtttatctgttcttgatgatttttttttttgtagTTGTTTGTTGTTCAAGGATCGAGATTTCGTGGAGCTCTCTATTCGCAGCTTGGAGATTGGACTTGTTTGAATTG
species | Arabidopsis thaliana |
transcript | AT5G48385.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTTTTTGATCTCTTCTTCTTACGGGTTTTTACTTCGTTTGATTTTCCTG TTGTTTGTTGTTCAAGGATCGAGATTTCGTGGAGCTCTCTATTCGCAGCTTEST: gi|116464506|gb|EG507098.1|EG507098
genomic: GTTTTTTGATCTCTTCTTCTTACGGGTTTTTACTTCGTTTGATTTTCCTGgtaaagttgc ... ttttttgtagTTGTTTGTTGTTCAAGGATCGAGATTTCGTGGAGCTCTCTATTCGCAGCTT
EST: GTTTTTTGATCTCTTCTTCTTACGGGTTTTTACTTCGTTTGATTTTCCTG TTGTTTGTTGTTCAAGGATCGAGATTTCGTGGAGCTCTCTATTCGCAGCTTEST: gi|116436739|gb|EG479331.1|EG479331
genomic: GTTTTTTGATCTCTTCTTCTTACGGGTTTTTACTTCGTTTGATTTTCCTGgtaaagttgc ... ttttttgtagTTGTTTGTTGTTCAAGGATCGAGATTTCGTGGAGCTCTCTATTCGCAGCTT
EST: GTTTTTTGATCTCTTCTTCTTACGGGTTTTTACTTCGTTTGATTTTCCTG TTGTTTGTTGTTCAAGGATCGAGATTTCGTGGAGCTCTCTATTCGCAGCTTEST: gi|116436761|gb|EG479353.1|EG479353
genomic: GTTTTTTGATCTCTTCTTCTTACGGGTTTTTACTTCGTTTGATTTTCCTGgtaaagttgc ... ttttttgtagTTGTTTGTTGTTCAAGGATCGAGATTTCGTGGAGCTCTCTATTCGCAGCTT
EST: GTTTTTTGATCTCTTCTTCTTACGGGTTTTTACTTCGTTTGATTTTCCTG TTGTTTGTTGTTCAAGGATCGAGATTTCGTGGAGCTCTCTATTCGCAGCTTEST: gi|116436695|gb|EG479287.1|EG479287
genomic: GTTTTTTGATCTCTTCTTCTTACGGGTTTTTACTTCGTTTGATTTTCCTGgtaaagttgc ... ttttttgtagTTGTTTGTTGTTCAAGGATCGAGATTTCGTGGAGCTCTCTATTCGCAGCTT
EST: GTTTTTTGATCTCTTCTTCTTACGGGTTTTTACTTCGTTTGATTTTCCTG TTGTTTGTTGTTCAAGGATCGAGATTTCGTGGAGCTCTCTATTCGCAGCTTEST: gi|116436717|gb|EG479309.1|EG479309
genomic: GTTTTTTGATCTCTTCTTCTTACGGGTTTTTACTTCGTTTGATTTTCCTGgtaaagttgc ... ttttttgtagTTGTTTGTTGTTCAAGGATCGAGATTTCGTGGAGCTCTCTATTCGCAGCTT
EST: GTTTTTTGATCTCTTCTTCTTACGGGTTTTTACTTCGTTTGATTTTCCTG TTGTTTGTTGTTCAAGGATCGAGATTTCGTGGAGCTCTCTATTCGCAGCTT
genomic: GTTTTTTGATCTCTTCTTCTTACGGGTTTTTACTTCGTTTGATTTTCCTGgtaaagttgc ... ttttttgtagTTGTTTGTTGTTCAAGGATCGAGATTTCGTGGAGCTCTCTATTCGCAGCTT
ggatagttttgactgatctttgtttatctgttcttgatgatttttttttttgtagTTGTTTGTTGTTCAAGGATCGAGATTTCGTGGAGCTCTCTATTCGCAGCTTGGAGATTGGACTTGTTTGAATTG
tttttttttttgt CT-rich tract
ttcttgatgatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacagagctaatttgtttttatctttaacgagtgatattgtcattggatagttttgactgatctttgtttatctgttcttgatgatttttttttttgtagTTGTTTGTTGTTCAAGGATCGAGATTTCGTGGAGCTCTCTATTCGCAGCTTGGAGATTGGACTTGTTTGAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - gttttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgttct