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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgatcccacatagatcccaaatgtttataggggatctggttcttaatgagattggtcccttgttgacttttgacaccattttgtagATTAGCAATGGCCCATACATCAGAATCTGTGAATCCTAGAG

Basic information

species Arabidopsis thaliana
transcript AT5G48230.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116435447|gb|EG478039.1|EG478039
EST:     TCTTTCAGCTCTCTCCATTCGGCGCTCTCTTCTGGAATTGAAGAATCAAG                         ATTAGCAATGGCCCATACATCAGAATCTGTGAATCCTAGAG
genomic: TCTTTCAGCTCTCTCCATTCGGCGCTCTCTTCTGGAATTGAAGAATCAAGgtaaatgatc ... cattttgtagATTAGCAATGGCCCATACATCAGAATCTGTGAATCCTAGAG
EST: gi|116435458|gb|EG478050.1|EG478050
EST:     TCTTTCAGCTCTCTCCATTCGGCGCTCTCTTCTGGAATTGAAGAATCAAG                         ATTAGCAATGGCCCATACATCAGAATCTGTGAATCCTAGAG
genomic: TCTTTCAGCTCTCTCCATTCGGCGCTCTCTTCTGGAATTGAAGAATCAAGgtaaatgatc ... cattttgtagATTAGCAATGGCCCATACATCAGAATCTGTGAATCCTAGAG
EST: gi|116466365|gb|EG508957.1|EG508957
EST:     TCTTTCAGCTCTCTCCATTCGGCGCTCTCTTCTGGAATTGAAGAATCAAG                         ATTAGCAATGGCCCATACATCAGAATCTGTGAATCCTAGAG
genomic: TCTTTCAGCTCTCTCCATTCGGCGCTCTCTTCTGGAATTGAAGAATCAAGgtaaatgatc ... cattttgtagATTAGCAATGGCCCATACATCAGAATCTGTGAATCCTAGAG
EST: gi|116435448|gb|EG478040.1|EG478040
EST:     TCTTTCAGCTCTCTCCATTCGGCGCTCTCTTCTGGAATTGAAGAATCAAG                         ATTAGCAATGGCCCATACATCAGAATCTGTGAATCCTAGAG
genomic: TCTTTCAGCTCTCTCCATTCGGCGCTCTCTTCTGGAATTGAAGAATCAAGgtaaatgatc ... cattttgtagATTAGCAATGGCCCATACATCAGAATCTGTGAATCCTAGAG
EST: gi|116435459|gb|EG478051.1|EG478051
EST:     TCTTTCAGCTCTCTCCATTCGGCGCTCTCTTCTGGAATTGAAGAATCAAG                         ATTAGCAATGGCCCATACATCAGAATCTGTGAATCCTAGAG
genomic: TCTTTCAGCTCTCTCCATTCGGCGCTCTCTTCTGGAATTGAAGAATCAAGgtaaatgatc ... cattttgtagATTAGCAATGGCCCATACATCAGAATCTGTGAATCCTAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatctggttcttaatgagattggtcccttgttgacttttgacaccattttgtagATTAGCAATGGCCCATACATCAGAATCTGTGAATCCTAGAG
                                    ttttgac  putative branch site (score: 3)
                                            ccatttt  CT-rich tract
        ttcttaat  TA-rich tract