1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttccatttttatttatattctccaataaaagatgattctttcaatgtgtgcaaattcttccatgaattgttgaattcttcttggtgtttggttttggtatcttcattgcaataatgtcatttctctctatgccatttgtgctccaattgaattaatggtatgtggttgcagATGGCGGAATTAAGCCGGAATATCCGTGACATGAAGTCGATTCTCTACGGGAACAGCGAAGCAGAGCCTGTGGCAGAAGCTTGTGCACAGTTGACTCAAG
species | Arabidopsis thaliana |
transcript | AT5G47540.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCGATCTACCTCTTTGCCTGACCTCCGAGATTCCAAACGCGACGAAAAG ATGGCGGAATTAAGCCGGAATATCCGTGACATGAAGTCGATTCTCTACGGGEST: gi|86030109|gb|DR325862.1|DR325862
genomic: ATCGATCTACCTCTTTGCCTGACCTCCGAGATTCCAAACGCGACGAAAAGgttccatttt ... gtggttgcagATGGCGGAATTAAGCCGGAATATCCGTGACATGAAGTCGATTCTCTACGGG
EST: ATCGATCTACCTCTTTGCCTGACCTCCGAGATTCCAAACGCGACGAAAAG ATGGCGGAATTAAGCCGGAATATCCGTGACATGAAGTCGATTCTCTACGGGEST: gi|124841259|gb|EH925698.1|EH925698
genomic: ATCGATCTACCTCTTTGCCTGACCTCCGAGATTCCAAACGCGACGAAAAGgttccatttt ... gtggttgcagATGGCGGAATTAAGCCGGAATATCCGTGACATGAAGTCGATTCTCTACGGG
EST: ATCGATCTACCTCTTTGCCTGACCTCCGAGATTCCAAACGCGACGAAAAG ATGGCGGAATTAAGCCGG
genomic: ATCGATCTACCTCTTTGCCTGACCTCCGAGATTCCAAACGCGACGAAAAGgttccatttt ... gtggttgcagATGGCGGAATTAAGCCGG
tcatttctctctatgccatttgtgctccaattgaattaatggtatgtggttgcagATGGCGGAATTAAGCCGGAATATCCGTGACATGAAGTCGATTCTCTACGGGAACAGCGAAGCAGAGCCTGTGGCAGAAGCTTGTGCACAGTTGACTCAAG
aattaat putative branch site (score: 3)
aattgaattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttccatttttatttatattctccaataaaagatgattctttcaatgtgtgcaaattcttccatgaattgttgaattcttcttggtgtttggttttggtatcttcattgcaataatgtcatttctctctatgccatttgtgctccaattgaattaatggtatgtggttgcagATGGCGGAATTAAGCCGGAATATCCGTGACATGAAGTCGATTCTCTACGGGAACAGCGAAGCAGAGCCTGTGGCAGAAGCTTGTGCACAGTTGACTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC