1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taaagcagagaaaaagttataaagtctcttcctttttggaattaaactcttgtttagattgatttgccttttcggggtatgttttgttatgtggttacagTAAATGGGGACCAAGTGGATCAGGAAATCCAAAATTTCAAAGAATTTGAACTAAATGAGTTGAGGAAAGCTACCAATGGGTTTAGTCCTAGCTGCATTGT
species | Arabidopsis thaliana |
transcript | AT5G46570.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TAATCTTCCTTCTTCTGATGATCCATCAGCTCCAAACAAACCAGAATCAG TAAATGGGGACCAAGTGGATCAGGAAATCCAAAATTTCAAAGAATTTGAACEST: gi|19876128|gb|AU236959.1|AU236959
genomic: TAATCTTCCTTCTTCTGATGATCCATCAGCTCCAAACAAACCAGAATCAGgtaataatac ... gtggttacagTAAATGGGGACCAAGTGGATCAGGAAATCCAAAATTTCAAAGAATTTGAAC
EST: TAATCTTCCTTCTTCTGATGATCCATCAGCTNCAAACAAACCAGAATCAG TAAATGGGGACCAAGTGNATCAGGAAATCCAAAATTTTNAAGAATTTGGAAEST: gi|86059596|gb|DR355353.1|DR355353
genomic: TAATCTTCCTTCTTCTGATGATCCATCAGCTCCAAACAAACCAGAATCAGgtaataatac ... gtggttacagTAAATGGGGACCAAGTGGATCAGGAAATCCAAAATTTCAAAGAATTTG-AA
EST: TAATCTTCCTTCTTCTGATGATCCATCAGCTCCAAACAAACCAGAATCAG TAAATGGGGACCAAGTGGATCAGGAAATCCCAAAATTTCAAAGAATTTGAA
genomic: TAATCTTCCTTCTTCTGATGATCCATCAGCTCCAAACAAACCAGAATCAGgtaataatac ... gtggttacagTAAATGGGGACCAAGTGGATCAGGAAATCC-AAAATTTCAAAGAATTTGAA
actcttgtttagattgatttgccttttcggggtatgttttgttatgtggttacagTAAATGGGGACCAAGTGGATCAGGAAATCCAAAATTTCAAAGAATTTGAACTAAATGAGTTGAGGAAAGCTACCAATGGGTTTAGTCCTAGCTGCATTGT
gattgat putative branch site (score: 4)
ttttgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaagcagagaaaaagttataaagtctcttcctttttggaattaaactcttgtttagattgatttgccttttcggggtatgttttgttatgtggttacagTAAATGGGGACCAAGTGGATCAGGAAATCCAAAATTTCAAAGAATTTGAACTAAATGAGTTGAGGAAAGCTACCAATGGGTTTAGTCCTAGCTGCATTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - agaaaaa
- - - - - - - - - - - - tctcttc
- - - - - - - - - - - - - - - - tttttgg
- - - - - - - - - - - - - - - - - - - - - taaactc
- - - - - - - - - - - - - - - - - - - - - - - - - tgtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttg