1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaatttcaaatctttaagattttgcttctgaaatttttctgaatggtttcttttaaatttctctttcgatttacataaatttgctcttcttatttggtgtgtctgcagTTCGGAAGTTTTGAATAGAGATCGTTAAAAATGGTGGATCCTGGACCAATTACTCCGGGCCAG
species | Arabidopsis thaliana |
transcript | AT5G46340.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATCATCTTCTTTATTCGTCGGTTAACGTCTCCATCTCTCTCTG TTCGGAAGTTTTGAATAGAGATCGTTAAAAATGGTGGATCCTGGACCAATTEST: gi|124943046|gb|EL019258.1|EL019258
genomic: GATCATCTTCTTTATTCGTCGGTTAACGTCTCAATCTCTCTCTGgtaatttcaa ... gtgtctgcagTTCGGAAGTTTTGAATAGAGATCGTTAAAAATGGTGGATCCTGGACCAATT
EST: TAACCAGATCATCTTCTTTATTCGTCGGTTAACGTCTCAATCTCTCTCTG TTCGGAAGTTTTGAATAAAGAGATCGTTAAAAATGGTGGATCCTGGACCA
genomic: TAACCAGATCATCTTCTTTATTCGTCGGTTAACGTCTCAATCTCTCTCTGgtaatttcaa ... gtgtctgcagTTCGGAAGTTTTGAATA--GAGATCGTTAAAAATGGTGGATCCTGGACCA
taaatttctctttcgatttacataaatttgctcttcttatttggtgtgtctgcagTTCGGAAGTTTTGAATAGAGATCGTTAAAAATGGTGGATCCTGGACCAATTACTCCGGGCCAG
atttacataaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttcaaatctttaagattttgcttctgaaatttttctgaatggtttcttttaaatttctctttcgatttacataaatttgctcttcttatttggtgtgtctgcagTTCGGAAGTTTTGAATAGAGATCGTTAAAAATGGTGGATCCTGGACCAATTACTCCGGGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA