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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaaaaagtatcaaagatctttcttttattgtgtaaaaaggttttgacttaatccatatttttgggttattgtagTGGCTGCGTTAATGTCAGTGAAGAACAAGATGAAAGATGAGAAAGAGGTTTTGTCTGGTTGGGATATTAACTCTGTTGATCCTTGTACTTGGAACATGGT

Basic information

species Arabidopsis thaliana
transcript AT5G45780.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G45780.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA13G30050.1 (Glycine max), 3'ss of exon 1
---------------gtgaaaaaagtatcaaagatctttcttttattgtgtaaaaa--ggtttt-----gacttaatccatatttttgggttattgt-agTGGCTGCGTTAATGTCAGTGAAGAACAAGATGAAAGATGAGAAAGAGGTTTTGTCTGGTTGGGATATTAACTCTGTTGATCCTTGTACTTGGAACATGGT
                |       || |    | |||||||    |||| |       |||||      ||  |  |   | || ||||||| || | |||||| || || |||||  ||||||  || ||||| ||||||    | ||  ||  ||||||||||||||| || ||||||||||||||||||||||||||
gtttggtgtttcttccttttgcttgttttctcg-tctttctagctttgttttggtttcggtttcagtgagagattgttgttgttgttgggttgttatcagTGGCCGCTTTGATGTCCATGAAGAGTAAAATGAATGATGAGTTGCATGTCATGGATGGTTGGGATATTAATTCGGTTGATCCTTGTACTTGGAACATGGT

upper sequence: AT5G45780.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA15G09100.1 (Glycine max), 3'ss of exon 1
--gtgaaaaaagtatcaaagatctttcttttat-tgtgtaaaaaggtttt-----gacttaatccatatttttgggttattgt-agTGGCTGCGTTAATGTCAGTGAAGAACAAGATGAAAGATGAGAAAGAGGTTT-TGTC-----TGGTTGGGATATTAACTCTGTTGATCCTTGTACTTGGAACATGGT
   ||       |  |       | | | | || | | ||     ||||      ||  |  |   | || ||||||| || | ||||||||| || |||||  ||||||  |||| ||| ||||||    | ||   ||||     ||||||||||||||| || ||||| |||||||||||| |      
gtttggtgtttcttccttttgcttgtttctcatctttttagctctgtttcagtgagagattgttgttgttgttgggttgttatcagTGGCTGCTTTGATGTCCATGAAGAGTAAGACGAATGATGAGTTCCATGTCCATGTCATGGATGGTTGGGATATTAATTCGGTTGACCCTTGTACTTGGGA------

upper sequence: AT5G45780.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv10s0003g01490.t01 (Vitis vinifera), 3'ss of exon 1
-------------gtgaaaaaagtatcaaagatctttcttttattgtgtaaaaaggtt-ttgac--ttaatccatatttttgggttattgtagTGGCTGCGTTAATGTCAGTGAAGAACAAGATGAAAGATGAGAAAGAGGTTTTGTCTGGTTGGGATATTAACTCTGTTGATCCTTGTACTTGGAACATGGT
                   |   ||||     ||||  | || ||   ||     ||| ||||    |  |||  | |||| | ||     |||||| || || ||| || ||||||| |||||||| ||||||    | ||  |   ||| ||||||||||||||||||||||| |||||||||||||||||
gttgttgccttcttctctcatgctatcttctttcttcttcttctttattattgttgttgttgatgtctcttcctcactttttgtttgg-acagTGGCCGCTTTGATGGCAATGAAGAATAAGATGAATGATGAGTCGAATGTGCTTGATGGGTGGGATATTAACTCTGTTGATCCCTGTACTTGGAACATGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttttattgtgtaaaaaggttttgacttaatccatatttttgggttattgtagTGGCTGCGTTAATGTCAGTGAAGAACAAGATGAAAGATGAGAAAGAGGTTTTGTCTGGTTGGGATATTAACTCTGTTGATCCTTGTACTTGGAACATGGT
                            ttaatccatattttt  TA-rich tract