1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aagacatgttctagataacattatttgtacgataccttgaattgcctgttttcgttgcatttctaatgtctttatatactgcttttgtgctcattatcagGTTAGATTAAGCTTCGTATTTAGTGGATTTTCTTCTTTTGAGATATGGAACAAGATTACATCTGCTCAGGGTGCTACCAGTATCGAGTTTTTTCATTGCA
species | Arabidopsis thaliana |
transcript | AT5G45430.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGTCTCTTCCCGTCGTCGGAGACGGAGTTTATGCCTATTGGCTCCTGAG GTTAGATTAAGCTTCGTATTTAGTGGATTTTEST: gi|116444405|gb|EG486997.1|EG486997
genomic: CAGTCTCTTCCCGTCGTCGGAGACGGAGTTTATGCCTATTGGCTCCTGAGgtaaaatcga ... tcattatcagGTTAGATTAAGCTTCGTATTTAGTGGATTTT
EST: CAGTCTCTTCCCGTCGTCGGAGACGGAGTTTATGCCTATTGGCTCCTGAG GTTAGATTAAGCTTCGTATTTAGTGGATTTTCTTCTTTTGAGATATGGAACEST: gi|116444417|gb|EG487009.1|EG487009
genomic: CAGTCTCTTCCCGTCGTCGGAGACGGAGTTTATGCCTATTGGCTCCTGAGgtaaaatcga ... tcattatcagGTTAGATTAAGCTTCGTATTTAGTGGATTTTCTTCTTTTGAGATATGGAAC
EST: CAGTCTCTTCCCGTCGTCGGAGACGGAGTTTATGCCTATTGGCTCCTGAG GTTAGATTAAGCTTCGTATTTAGTGGATTTTCTTCTTTTGAGATATGGAACEST: gi|124928551|gb|EL006187.1|EL006187
genomic: CAGTCTCTTCCCGTCGTCGGAGACGGAGTTTATGCCTATTGGCTCCTGAGgtaaaatcga ... tcattatcagGTTAGATTAAGCTTCGTATTTAGTGGATTTTCTTCTTTTGAGATATGGAAC
EST: CAGTCTCTTCCCGTCGTCGGAGACGGAGTTTATGCCTATTGGCTCCTGAG GTTAGATTAAGCTTCGTATTTAGTGGATTTTCTTCTTTTGAGATATGGAAC
genomic: CAGTCTCTTCCCGTCGTCGGAGACGGAGTTTATGCCTATTGGCTCCTGAGgtaaaatcga ... tcattatcagGTTAGATTAAGCTTCGTATTTAGTGGATTTTCTTCTTTTGAGATATGGAAC
ctgttttcgttgcatttctaatgtctttatatactgcttttgtgctcattatcagGTTAGATTAAGCTTCGTATTTAGTGGATTTTCTTCTTTTGAGATATGGAACAAGATTACATCTGCTCAGGGTGCTACCAGTATCGAGTTTTTTCATTGCA
ttctaat putative branch site (score: 2)
taatgtctttatata TA-rich tract