1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttctttgttaattctggttctattgtttaatgatggattgcaattttgtgtgacttggatttgtcttttgataaagatttgctcttttaatttcttgtagAACGATCAGACCTCCTATGAATAGAAGCATCTTCTTTTCACTCTTCTTTCTTGGTTTAGCAGG
species | Arabidopsis thaliana |
transcript | AT5G45370.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATCTTCTTGCTCTCTCCATTCTCGCACCTCTCGCTTTTTTCCGTGAAAG AACGATCAGACCTCCTATGAATAGAAGCATCTTCTTTTCACTCTTCTTTCTEST: gi|19879168|gb|AU239999.1|AU239999
genomic: GATCTTCTTGCTCTCTCCATTCTCGCACCTCTCGCTTTTTTCCGTGAAAGgtcccttttt ... tttcttgtagAACGATCAGACCTCCTATGAATAGAAGCATCTTCTTTTCACTCTTCTTTCT
EST: GATCTTCTTGCTCTCTCCATTCTCGCACCTCTCGCTTTTTTCCGTGAAAG AACGATCAGACCTCCTATGAATAGAAGCATCTTCTTTTCACTCTTCTTTCT
genomic: GATCTTCTTGCTCTCTCCATTCTCGCACCTCTCGCTTTTTTCCGTGAAAGgtcccttttt ... tttcttgtagAACGATCAGACCTCCTATGAATAGAAGCATCTTCTTTTCACTCTTCTTTCT
ttgtgtgacttggatttgtcttttgataaagatttgctcttttaatttcttgtagAACGATCAGACCTCCTATGAATAGAAGCATCTTCTTTTCACTCTTCTTTCTTGGTTTAGCAGG
ttttaat putative branch site (score: 3)
ctcttttaatttctt CT-rich tract
ttttgataaagattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctttgttaattctggttctattgtttaatgatggattgcaattttgtgtgacttggatttgtcttttgataaagatttgctcttttaatttcttgtagAACGATCAGACCTCCTATGAATAGAAGCATCTTCTTTTCACTCTTCTTTCTTGGTTTAGCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC