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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttagattctctcactcttgtcttcttatgtgttttttgattctccgattgtgattttttgaatttttgagatttgtgtagGCGTTAAGCAAGATCGCGTGTAATAGGTTACAAAAGGAGTTATCAGAGTGGCAAGTAAATCCACCGACTGGGTTTAAGCACAGAGTTACTGATAATCTTC

Basic information

species Arabidopsis thaliana
transcript AT5G42990.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124736961|gb|EH828363.1|EH828363
EST:     CTCTCTCTTTGTCTCCGCCATGACAAGCTCTTCATCTCCTTCGCGCAAG                         GCGTTAAGCAAGATCGCGTGTAATAGGTTACAAAAGGAGTTATCAGAGTGG
genomic: CTCTCTCTTTGTCTCCGCCATGACAAGCTCTTCATCTCCTTCACGCAAGgttcttagat ... atttgtgtagGCGTTAAGCAAGATCGCGTGTAATAGGTTACAAAAGGAGTTATCAGAGTGG
EST: gi|124959963|gb|EL034663.1|EL034663
EST:     TCTTTGTCTCCGCCATGACAAGCTC-TCATCTCCTTCACGCAAG                         GCGTTAAGCAAGATCGCGTGTAATAGGTTACAAAAGGAGTTATCAGAGTGG
genomic: TCTTTGTCTCCGCCATGACAAGCTCTTCATCTCCTTCACGCAAGgttcttagat ... atttgtgtagGCGTTAAGCAAGATCGCGTGTAATAGGTTACAAAAGGAGTTATCAGAGTGG
EST: gi|125321234|gb|EL335319.1|EL335319
EST:     CTTTGTCTCCGCCATGACAAGCTCTTCATCTCCTTCACGCAAG                         GCGTTAAGCAAGATCGCGTGTAATAGGTTACAAAAGGAGTTATCAGAGTGG
genomic: CTTTGTCTCCGCCATGACAAGCTCTTCATCTCCTTCACGCAAGgttcttagat ... atttgtgtagGCGTTAAGCAAGATCGCGTGTAATAGGTTACAAAAGGAGTTATCAGAGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgtgttttttgattctccgattgtgattttttgaatttttgagatttgtgtagGCGTTAAGCAAGATCGCGTGTAATAGGTTACAAAAGGAGTTATCAGAGTGGCAAGTAAATCCACCGACTGGGTTTAAGCACAGAGTTACTGATAATCTTC
        ttttgat  putative branch site (score: 4)
                           attttttgaatttttg  TA-rich tract