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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtcttcttcctccgatctctcactctttttaatcaatttcgcttttgagatctgatgatttttccgatctctgttttctcagCTACAACTCTCACCGGTTTCCACTTCGCTTTAACCGCATTGGTCGGTATGGTATCAAACGCTACCGGATTCTCTGCTTCGAAGCATGTACCTATGTGGGA

Basic information

species Arabidopsis thaliana
transcript AT5G42420.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125215521|gb|EL229605.1|EL229605
EST:     CATGGCGAATAAACAACTTATGTCCTCTTCTGGATTCGCATTTAGTTTCG                         CTACAACTCTCA
genomic: CATGGCGAATAAACAACTTATGTCCTCTTCTGGATTCGCATTTAGTTTCGgttcgtcttc ... gttttctcagCTACAACTCTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaatcaatttcgcttttgagatctgatgatttttccgatctctgttttctcagCTACAACTCTCACCGGTTTCCACTTCGCTTTAACCGCATTGGTCGGTATGGTATCAAACGCTACCGGATTCTCTGCTTCGAAGCATGTACCTATGTGGGA
                               tttttccgatctctgt  CT-rich tract
                           atgattttt  TA-rich tract