1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacacttattagttttgtgattcttattcttgtgattgtgaaatttgtacctaagtaggtatttgtatattcttgtgttggagaaaagattgtattgtatctctgagattgattgtttttggttctgcagTTATCAAATTTGCAAGAGCTACTGGTGATTTGCAATCTCTGTCTGATGTTGATCTGAAGTTGATTGCTTTGTCATACACGCTTGAGGCTCAGGTTTATGG
species | Arabidopsis thaliana |
transcript | AT5G41190.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCTTTCACTATTGATACCATGGAACCTTCTCCTGAATCTCTAAGTAAAG TTATCAAATTTGCAAGAGCTACTGGTGATTTGCAATCTCTGTCTGATGTTGEST: gi|116466400|gb|EG508992.1|EG508992
genomic: CCCTTTCACTATTGATACCATGGAACCTTCTCCTGAATCTCTAAGTAAAGgtacacttat ... ggttctgcagTTATCAAATTTGCAAGAGCTACTGGTGATTTGCAATCTCTGTCTGATGTTG
EST: CCCTTTCACTATTGATACCATGGAACCTTCTCCTGAATCTCTAAGTAAAG TTATCAAATTTGCAAGAGCTACTGGTGATTTGCAATCTCTGTCTGATGTTGEST: gi|86073057|gb|DR368814.1|DR368814
genomic: CCCTTTCACTATTGATACCATGGAACCTTCTCCTGAATCTCTAAGTAAAGgtacacttat ... ggttctgcagTTATCAAATTTGCAAGAGCTACTGGTGATTTGCAATCTCTGTCTGATGTTG
EST: CCCTTTCACTATTGATACCATGGAACCTTCTCCTGAATCTCTAAGTAAAG TTATCAAATTTGCAAGAGCTACTGGTGATTTGCAATCTCTGTCTGATGTTG
genomic: CCCTTTCACTATTGATACCATGGAACCTTCTCCTGAATCTCTAAGTAAAGgtacacttat ... ggttctgcagTTATCAAATTTGCAAGAGCTACTGGTGATTTGCAATCTCTGTCTGATGTTG
tgttggagaaaagattgtattgtatctctgagattgattgtttttggttctgcagTTATCAAATTTGCAAGAGCTACTGGTGATTTGCAATCTCTGTCTGATGTTGATCTGAAGTTGATTGCTTTGTCATACACGCTTGAGGCTCAGGTTTATGG
gattgat putative branch site (score: 4)
attgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacacttattagttttgtgattcttattcttgtgattgtgaaatttgtacctaagtaggtatttgtatattcttgtgttggagaaaagattgtattgtatctctgagattgattgtttttggttctgcagTTATCAAATTTGCAAGAGCTACTGGTGATTTGCAATCTCTGTCTGATGTTGATCTGAAGTTGATTGCTTTGTCATACACGCTTGAGGCTCAGGTTTATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG