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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttgatttctccattttctccaatttttggatgctgagaaagtttagtctttttagcctctgtctgttaacacttgctcattgagttgatctagaaagttagaaactttagttttgttactgatcatttagaagtatttgatgttttgctgttttgtattcagTTGAAGCAGTTAGAAGATTCAAGGAAGCCATTTATAAGGACCCATTGCTAGTTATGTCTAATTGGAATGTCCCCAATTTGAGTCCTTGTGATTGGAATGG

Basic information

species Arabidopsis thaliana
transcript AT5G41180.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877449|gb|AU238280.1|AU238280
EST:     TGTTCTAGGGTTCCTCTTTGTTTCCTGTGACGCGTTTGCCTCTAAAGAAG                         TTGAAGCAGTTAGAAGATTCAAGGAAGCCATTTATAAGGACCCATTGCTAG
genomic: TGTTCTAGGGTTCCTCTTTGTTTCCTGTGACGCGTTTGCCTCTAAAGAAGgtattttgat ... ttgtattcagTTGAAGCAGTTAGAAGATTCAAGGAAGCCATTTATAAGGACCCATTGCTAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagttttgttactgatcatttagaagtatttgatgttttgctgttttgtattcagTTGAAGCAGTTAGAAGATTCAAGGAAGCCATTTATAAGGACCCATTGCTAGTTATGTCTAATTGGAATGTCCCCAATTTGAGTCCTTGTGATTGGAATGG
                                        ctgtttt  CT-rich tract
                 atttagaagtattt  TA-rich tract