Sequence
atgc intronic sequence ATGC exonic sequencegtaaattctcatgatcgaatcattaattagggtgaaatttgaaaaactagggtttcttatgaatttgagcattttgggggtgaaattgcaaagttagggttttttttatttatgaatttgagcatttgggtattgaaagttatgttgtggattctctcagGTGATATTCATGGTCAATATCAAGATCTTTTGAGGTTGTTTGAATACGGAGGTTATCCTCCTTCAGCAAACTATCTATTCCTTGGTGATTACGTTGACAG
Basic information
species | Arabidopsis thaliana |
transcript | AT5G27840.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G27840.2 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: PP1S39_109V6.1 (Physcomitrella patens), 3'ss of exon 2
gtaaattctcatgatcgaatcattaattagggtgaaatttgaaaaactagggtttcttatgaatttgagcattttgggggtgaaattgcaaagttagggttttttttatttatgaatttgagcatttgggtattgaaagttatgttgtggattctctcagGTGATATTCATGGTCAATATCAAGATCTTTTGAGGTTGTTTGAATACGGAGGTTATCCTCCTTCAGCAAACTATCTATTCCTTGGTGATTACGTTGACAG
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---------------------------------------------------ggctgcgacgaatctagtctctttgagaagctcctggtcgttttgtgtttcatgctgttc-----ctcgaagtattggctgataagcgccgttctt---atgctg-cagGTGATATCCATGGTCAATACTCTGACCTTTTGAGGTTGTTTGAATATGGTGGCTTTCCACCTGATGCAAATTACTTGTTCTTAGGAGACTATGTTGACAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124883068|gb|EH961970.1|EH961970EST: CCTCTCTCAACCTAATCTCCTTGATCTCCATGCCCCAATTCGCATCTGCG GTGATATTCATGGTCAAATATCAAGATCTTTTGAGGTTGTTTGAATAC
genomic: CCTCTCTCAACCTAATCTCCTTGATCTCCATGCCCCAATTCGCATCTGCGgtaaattctc ... attctctcagGTGATATTCATGGTCAA-TATCAAGATCTTTTGAGGTTGTTTGAATAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttatttatgaatttgagcatttgggtattgaaagttatgttgtggattctctcagGTGATATTCATGGTCAATATCAAGATCTTTTGAGGTTGTTTGAATACGGAGGTTATCCTCCTTCAGCAAACTATCTATTCCTTGGTGATTACGTTGACAG
ttctctc CT-rich tract
tatgaattt TA-rich tract