1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgagtatctccatcttcctccagatctcatttcctctaaatcgatattagttttttggtaacgagattaactccttttgtgaaaatggtttagGCGATTCGTTGAAGCGTGAATCTGGAAGTAAGGTTCATCATGGTAATATCCAAGCTTCCAAG
species | Arabidopsis thaliana |
transcript | AT5G26360.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAAATATGCACGCACCGGTACTCGTTCTGA GCGATTCGTTGAAGCGTGAATCTGGAAGTAAGGTTCATCATGGTAATATCCEST: gi|86074170|gb|DR369927.1|DR369927
genomic: CAAATATGCACGCACCGGTACTCGTTCTGAgtgagtatct ... aatggtttagGCGATTCGTTGAAGCGTGAATCTGGAAGTAAGGTTCATCATGGTAATATCC
EST: ACTGTGAAAACCTCAGATCGCAAATATGCACGCACCGGTACTCGTTCTGA GCGATTCGTTGAAGCGTGAATCTGGAAGCAAGGTTCATCATGGTAATATCCEST: gi|47830309|gb|CK119993.1|CK119993
genomic: ACTGTGAAAACCTCAGATCGCAAATATGCACGCACCGGTACTCGTTCTGAgtgagtatct ... aatggtttagGCGATTCGTTGAAGCGTGAATCTGGAAGTAAGGTTCATCATGGTAATATCC
EST: ACTGTGAAAACCTCAGATCGCAAATATGCACGCACCGGTACTCGTTCTGA GCGATTCGTTGAAGCGTGAATCTGGAAGTAAGGTTCATCATGGTAATATCCEST: gi|124954522|gb|EL029609.1|EL029609
genomic: ACTGTGAAAACCTCAGATCGCAAATATGCACGCACCGGTACTCGTTCTGAgtgagtatct ... aatggtttagGCGATTCGTTGAAGCGTGAATCTGGAAGTAAGGTTCATCATGGTAATATCC
EST: ACTGTGAAAACCTCAGATCGCAAATATGCACGCACCGGTACTCGTTCTGA GCGATTCGTTGAAG
genomic: ACTGTGAAAACCTCAGATCGCAAATATGCACGCACCGGTACTCGTTCTGAgtgagtatct ... aatggtttagGCGATTCGTTGAAG
aatcgatattagttttttggtaacgagattaactccttttgtgaaaatggtttagGCGATTCGTTGAAGCGTGAATCTGGAAGTAAGGTTCATCATGGTAATATCCAAGCTTCCAAG
gattaac putative branch site (score: 2)
atattagtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatctccatcttcctccagatctcatttcctctaaatcgatattagttttttggtaacgagattaactccttttgtgaaaatggtttagGCGATTCGTTGAAGCGTGAATCTGGAAGTAAGGTTCATCATGGTAATATCCAAGCTTCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT