1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttggaatagacttaagctagaagcgattattgtgtggccttattgctagagcttcaaaaacaattgctaaagtctcattctttatgttggttttgtgtagAATCCTGAGAAATTTAGAATGGATTGTGAGGAAAACGTTAGGGATGAATCACTCGTTTTGATTAAACAAGGAGCAGAAGCT
species | Arabidopsis thaliana |
transcript | AT5G26110.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCTCCGGCGAACACATACGAGCTCCTCTCCGTCACCACTCAGCTTGCAG AATCCTGAGAAATTTAGAATGGATTGTGAGGAAAACGTTAGGGATGAATCAEST: gi|125239711|gb|EL253796.1|EL253796
genomic: TTCTCCGGCGAACACATACGAGCTCCTCTCCGTCACCACTCAGCTTGCAGgttcaattcg ... ttttgtgtagAATCCTGAGAAATTTAGAATGGATTGTGAGGAAAACGTTAGGGATGAATCA
EST: TTCTCCGGCGAACACATACGAGCTCCTCTCCGTCACCACTCAGCTTGCAG AATCCTGAGAAATTTAGAATGGATTGTGAGGAAAACGTTA
genomic: TTCTCCGGCGAACACATACGAGCTCCTCTCCGTCACCACTCAGCTTGCAGgttcaattcg ... ttttgtgtagAATCCTGAGAAATTTAGAATGGATTGTGAGGAAAACGTTA
ctagagcttcaaaaacaattgctaaagtctcattctttatgttggttttgtgtagAATCCTGAGAAATTTAGAATGGATTGTGAGGAAAACGTTAGGGATGAATCACTCGTTTTGATTAAACAAGGAGCAGAAGCT
tgctaaa putative branch site (score: 2)
aaaaacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggaatagacttaagctagaagcgattattgtgtggccttattgctagagcttcaaaaacaattgctaaagtctcattctttatgttggttttgtgtagAATCCTGAGAAATTTAGAATGGATTGTGAGGAAAACGTTAGGGATGAATCACTCGTTTTGATTAAACAAGGAGCAGAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - caaaaac