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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgaaattttcaatcgattcatcgctattcctgggtagaatttgagaaatttgttcatcggagattgatttgattgattaatcgatggggttttcgatcttaatcgcagAAAGCAGAGGATGAAACGGCTCGTTTGTATCAAGAATTCGTGGAATCGTTTCAAGGGGATAATGCAACTACTAAGACTTTTGTTCGAGGTGGGACGATAA

Basic information

species Arabidopsis thaliana
transcript AT5G25060.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G25060.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv04s0008g06810.t01 (Vitis vinifera), 3'ss of exon 1
gtgagttgaaattttcaatcgattcatcgctattcctgggtagaatttgagaaatttgttcatcggagattgatttgattgattaatcgatggggttttcgatcttaatcgcagAAAGCAGAGGATGAAACGGCTCGTTTGTATCAAGAATTCGTGGAATCGTTTCAAGGGGATAATGCAACTA---CTAAGACTTTTGTTCGAGGTGGGACGATAA
                 | |  | ||| |     | |   | || ||||     ||| | |      ||  |||||| ||  | |    |   | |||  | |    ||   ||| ||| ||||||||||| ||||| || |||   ||||||||||| || |||||||||||||||||  |     | ||||||||||||||||| ||||| |   
---------------gtaacattccatagaccgccttaaattgattttg-----tttttccgaaaagga--gatttg-ttagtcatctcaatagatttgtgtt----atgatagAGAGCTGAGGATGAAACTGCTCGATTATATGCCGAATTCGTGGAGTCATTTCAAGGGGATAATGCGCCAGGGTCAAAGACTTTTGTTCGAGGGGGGACAA---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatcggagattgatttgattgattaatcgatggggttttcgatcttaatcgcagAAAGCAGAGGATGAAACGGCTCGTTTGTATCAAGAATTCGTGGAATCGTTTCAAGGGGATAATGCAACTACTAAGACTTTTGTTCGAGGTGGGACGATAA
                                           tcttaat  putative branch site (score: 3)
             atttgattgattaat  TA-rich tract