1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaaaatttcgtaattgagatcttaagaaacagatttggctgctgtgatttttctcatttttgtgtttgtttttatgagttttattagATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACAGGAAGGCCATCAACGTTTAGTAGATCATCAACTCCGAATGCGTCTCCCC
species | Arabidopsis thaliana |
transcript | AT5G23700.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCG ATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACAEST: gi|116454918|gb|EG497510.1|EG497510
genomic: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCGgtaaaatttc ... gttttattagATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
EST: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCG ATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACAEST: gi|116454955|gb|EG497547.1|EG497547
genomic: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCGgtaaaatttc ... gttttattagATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
EST: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCG ATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACAEST: gi|116454856|gb|EG497448.1|EG497448
genomic: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCGgtaaaatttc ... gttttattagATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
EST: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCG ATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACAEST: gi|116410234|gb|EG452826.1|EG452826
genomic: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCGgtaaaatttc ... gttttattagATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
EST: CGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCG ATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACAEST: gi|116454987|gb|EG497579.1|EG497579
genomic: CGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCGgtaaaatttc ... gttttattagATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
EST: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCG ATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACAEST: gi|116454956|gb|EG497548.1|EG497548
genomic: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCGgtaaaatttc ... gttttattagATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
EST: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCG ATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACAEST: gi|116454973|gb|EG497565.1|EG497565
genomic: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCGgtaaaatttc ... gttttattagATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
EST: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCG ATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACAEST: gi|116454917|gb|EG497509.1|EG497509
genomic: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCGgtaaaatttc ... gttttattagATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
EST: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCG ATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACAEST: gi|116454972|gb|EG497564.1|EG497564
genomic: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCGgtaaaatttc ... gttttattagATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
EST: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCG ATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACAEST: gi|116454897|gb|EG497489.1|EG497489
genomic: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCGgtaaaatttc ... gttttattagATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
EST: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCG ATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACAEST: gi|116454988|gb|EG497580.1|EG497580
genomic: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCGgtaaaatttc ... gttttattagATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
EST: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCG ATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
genomic: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCGgtaaaatttc ... gttttattagATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
atttggctgctgtgatttttctcatttttgtgtttgtttttatgagttttattagATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACAGGAAGGCCATCAACGTTTAGTAGATCATCAACTCCGAATGCGTCTCCCC
ttttatt CT-rich tract
tttgtttttatgagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatttcgtaattgagatcttaagaaacagatttggctgctgtgatttttctcatttttgtgtttgtttttatgagttttattagATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACAGGAAGGCCATCAACGTTTAGTAGATCATCAACTCCGAATGCGTCTCCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA