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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttaaagttttcatctttatgttcttttttggtgattgatcgatttttggcaatgcctgtaaggtgttagatacaatatctgagtaaatctcagtcattgtctgttaaagttttgttttgttgcaagtctcaatcaaaagttctttttttggttttgttgttttctgcttagttttggtgtttgactttgtaacagACTGTACTACACGAAACTACGATTAGGAACTCCTCCAAGAGATTTTTATGTACAGGTTGATACAGGAAGTGATGTTTTGTGGGTTAGTTGTGCTTCTTGT

Basic information

species Arabidopsis thaliana
transcript AT5G22850.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116419293|gb|EG461885.1|EG461885
EST:     GGAGTCATAGATTTTCCCGTGGATGGAACTTTTGATCCTTTCGTTGTTGG                         ACTGTACTACACGAAACTACGATTAGGAACTCCTCCAAGAGATTTTTATGT
genomic: GGAGTCATAGATTTTCCCGTGGACGGAACTTTTGATCCTTTCGTTGTTGGgtaatttaaa ... tttgtaacagACTGTACTACACGAAACTACGATTAGGAACTCCTCCAAGAGATTTTTATGT
EST: gi|86070098|gb|DR365855.1|DR365855
EST:     GGAGTCATAGATTTTCCCGTGGACGGAACTTTTGATCCTTTCGTTGTTGG                         ACTGTACTACACGAAACTACGATTAGGAACTCCTCCAAGAGATTTTTATGT
genomic: GGAGTCATAGATTTTCCCGTGGACGGAACTTTTGATCCTTTCGTTGTTGGgtaatttaaa ... tttgtaacagACTGTACTACACGAAACTACGATTAGGAACTCCTCCAAGAGATTTTTATGT
EST: gi|19875261|gb|AU236092.1|AU236092
EST:     GGAGTCATAGATTTTCCCGNGGACGGAACTTTTGATCCTTTCGTTGGTGG                         G
genomic: GGAGTCATAGATTTTCCCGTGGACGGAACTTTTGATCCTTTCGTTGTTGGgtaatttaaa ... tttgtaacag-
EST: gi|19875261|gb|AU236092.1|AU236092
EST:     GGAGTCATAGATTTTCCCGNGGACGGAACTTTTGATCCTTTCGTTGGTGG                         G
genomic: GGAGTCATAGATTTTCCCGTGGACGGAACTTTTGATCCTTTCGTTGTTGGgtaatttaaa ... tttgtaacag-
EST: gi|86070099|gb|DR365856.1|DR365856
EST:     GGAGTCATAGATTTTCCCGTGGACGGAACTTTTGATCCTTTCGTTGTTGG                         ACTGTACTACACGAAACTA
genomic: GGAGTCATAGATTTTCCCGTGGACGGAACTTTTGATCCTTTCGTTGTTGGgtaatttaaa ... tttgtaacagACTGTACTACACGAAACTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttttttggttttgttgttttctgcttagttttggtgtttgactttgtaacagACTGTACTACACGAAACTACGATTAGGAACTCCTCCAAGAGATTTTTATGTACAGGTTGATACAGGAAGTGATGTTTTGTGGGTTAGTTGTGCTTCTTGT
                                      gtttgac  putative branch site (score: 4)
                           ttagtttt  TA-rich tract