1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...attgtaactttgctcttctcggaatatttgttttggaagtataaattgtctctcgtgtgctatcccatctcttacctcttttggtatctcattactttagTGCAACAGTCTTTGGGGTATCAACCGAATCAATGCAATTATCGTATGATTCAAGAGGCAATTGTGTACCAACCATACTATTGCTGATGCAAAACTGTTTA
species | Arabidopsis thaliana |
transcript | AT5G22400.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGCCTGTTGAATTCGAGCCTGAAGTTCCTAGAAGAGCTCCAAGCGCCAG TGCAACAGTCTTTGGGGTATCAACCGAATCAATGCAATTATCGTATGATTCEST: gi|86070489|gb|DR366246.1|DR366246
genomic: TTGCCTGTTGAATTCGAGCCTGAAGTTCCTAGAAGAGCTCCAAGCGCCAGgtacattgtc ... attactttagTGCAACAGTCTTTGGGGTATCAACCGAATCAATGCAATTATCGTATGATTC
EST: TTGCCTGTTGAATTCGAGCCTGAAGTTCCTAGAAGAGCTCCAAGCGCCAG TGCAACAGTCTTTGGGGTATCAACCGAATCAATGCAATTATCGTATGATTC
genomic: TTGCCTGTTGAATTCGAGCCTGAAGTTCCTAGAAGAGCTCCAAGCGCCAGgtacattgtc ... attactttagTGCAACAGTCTTTGGGGTATCAACCGAATCAATGCAATTATCGTATGATTC
ttgtctctcgtgtgctatcccatctcttacctcttttggtatctcattactttagTGCAACAGTCTTTGGGGTATCAACCGAATCAATGCAATTATCGTATGATTCAAGAGGCAATTGTGTACCAACCATACTATTGCTGATGCAAAACTGTTTA
ctcttac putative branch site (score: 3)
tctcatt putative PPT
attacttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgtaactttgctcttctcggaatatttgttttggaagtataaattgtctctcgtgtgctatcccatctcttacctcttttggtatctcattactttagTGCAACAGTCTTTGGGGTATCAACCGAATCAATGCAATTATCGTATGATTCAAGAGGCAATTGTGTACCAACCATACTATTGCTGATGCAAAACTGTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - -ttgctct
- - - - - - - - - - - - - - -gttttgg