1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcctatttatgcatgaaggttttcttactagtctttataatttgtagttagttctaaatctcaaacctcgttaacactaaaattatttctaattgaacagTGAGAATGCTCAGAGAAGAGTTACAGCTCCTTCAAGAACCTGGGTCCTATGTGGGAGAAGTGGTAAAAGTTATGGGAAAGAACAAGGTCTTGGTTAAG
species | Arabidopsis thaliana |
transcript | AT5G19990.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TAATAACCTCAATCGCCTTGAAGCTCAAAGGAATGAACTCAATTCTCGAG TGAGAATGCTCAGAGAAGAGTTACAGCTCCTTCAAGAACCTGGGTCCTATGEST: gi|301502412|gb|HO207952.1|HO207952
genomic: TAATAACCTCAATCGCCTTGAAGCTCAAAGGAATGAACTCAATTCTCGAGgtctcttctt ... aattgaacagTGAGAATGCTCAGAGAAGAGTTACAGCTCCTTCAAGAACCTGGGTCCTATG
EST: TAATAACCTCAATCGCCTTGAAGCTCAAAGGAATGAACTCAATTCTCGAG TGAGAATGCTCAGAGAAGAGTTACAGCTCCTTCAAGAACCTGGGTCCTATGEST: gi|125125146|gb|EL170722.1|EL170722
genomic: TAATAACCTCAATCGCCTTGAAGCTCAAAGGAATGAACTCAATTCTCGAGgtctcttctt ... aattgaacagTGAGAATGCTCAGAGAAGAGTTACAGCTCCTTCAAGAACCTGGGTCCTATG
EST: CGCCTTGAAGCTCAAAGGAATGAACTCAATTCTCGAG TGAGAATGCTCAGAGAAGAGTTACAGCTCCTTCAAGAACCTGGGTCCTATGEST: gi|125276997|gb|EL291082.1|EL291082
genomic: CGCCTTGAAGCTCAAAGGAATGAACTCAATTCTCGAGgtctcttctt ... aattgaacagTGAGAATGCTCAGAGAAGAGTTACAGCTCCTTCAAGAACCTGGGTCCTATG
EST: CTCAATCGCCTTGAAGCTCAAAGGAATGAACTCAATTCTCGAG TGAGAATGCTCAGAGAAGAGTTACAGCTCCTTCAAGAACCTGGGTCCTATG
genomic: CTCAATCGCCTTGAAGCTCAAAGGAATGAACTCAATTCTCGAGgtctcttctt ... aattgaacagTGAGAATGCTCAGAGAAGAGTTACAGCTCCTTCAAGAACCTGGGTCCTATG
agttagttctaaatctcaaacctcgttaacactaaaattatttctaattgaacagTGAGAATGCTCAGAGAAGAGTTACAGCTCCTTCAAGAACCTGGGTCCTATGTGGGAGAAGTGGTAAAAGTTATGGGAAAGAACAAGGTCTTGGTTAAG
ttctaat putative branch site (score: 2)
ttaacactaaaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcctatttatgcatgaaggttttcttactagtctttataatttgtagttagttctaaatctcaaacctcgttaacactaaaattatttctaattgaacagTGAGAATGCTCAGAGAAGAGTTACAGCTCCTTCAAGAACCTGGGTCCTATGTGGGAGAAGTGGTAAAAGTTATGGGAAAGAACAAGGTCTTGGTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctaaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acactaa