1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagtcctactaaatcgaatggttttagggtatcggttcctaggagagtgagattgaccaaggaaagctgaaattcaataaaaatgttagcttttcctcttttctgtttataaagttcaaaacttttctgctatacgtttttcagGAAAAGTTAGGTGAGTTCATTCCATTTGTTATAGAGGAACAAATCGTTGGTTATATTCATAAAAG
species | Arabidopsis thaliana |
transcript | AT5G19460.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGATCTCACCGGATTTTTCGAGAAAATCAACCGCTGCAATCGCGGATCC GAAAAGTTAGGTGAGTTCATTCCATTTCGTTATAGAGGAACAAATCGTTGGEST: gi|86017880|gb|DR313626.1|DR313626
genomic: CCGATCTCACCGGATTTTTCGAGAAAATCAACCGCTGCAATCGCGGATCCgtaagtccta ... cgtttttcagGAAAAGTTAGGTGAGTTCATTCCATTT-GTTATAGAGGAACAAATCGTTGG
EST: CCGATCTCACCGGATTTTTCGAGAAAATCAACCGCTGCAATCGCGGATCC GAAAAGTTAGGTGAGTTCATTCCATTTGTTATAGAGGAACAAATCGTTGGTEST: gi|86017879|gb|DR313625.1|DR313625
genomic: CCGATCTCACCGGATTTTTCGAGAAAATCAACCGCTGCAATCGCGGATCCgtaagtccta ... cgtttttcagGAAAAGTTAGGTGAGTTCATTCCATTTGTTATAGAGGAACAAATCGTTGGT
EST: CCGATCTCACCGGATTTTTCGAGAAAATCAACCGCTGCAATCGCGGATCC GAAAAGTTAGGTGAGTTCATTCCATTTGTTATAGAGGAACAAATCGTTGGT
genomic: CCGATCTCACCGGATTTTTCGAGAAAATCAACCGCTGCAATCGCGGATCCgtaagtccta ... cgtttttcagGAAAAGTTAGGTGAGTTCATTCCATTTGTTATAGAGGAACAAATCGTTGGT
cttttcctcttttctgtttataaagttcaaaacttttctgctatacgtttttcagGAAAAGTTAGGTGAGTTCATTCCATTTGTTATAGAGGAACAAATCGTTGGTTATATTCATAAAAG
cgtttttc CT-rich tract
tttataaagttcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcctactaaatcgaatggttttagggtatcggttcctaggagagtgagattgaccaaggaaagctgaaattcaataaaaatgttagcttttcctcttttctgtttataaagttcaaaacttttctgctatacgtttttcagGAAAAGTTAGGTGAGTTCATTCCATTTGTTATAGAGGAACAAATCGTTGGTTATATTCATAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA