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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagcttcgtttctctccttttatttctgtagaattttgaattttgaattttgacaagtactaaaaattcgaattttgtgaattgatgcagAATGGAGGAGATTGGATTTGTCTTCCCCACGGATATTCAAAGAGAAGCTCTTCCTACTTTGTTTACAGGCCGTGATTGCATCCTCCATGCTCAA

Basic information

species Arabidopsis thaliana
transcript AT5G19210.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876080|gb|AU236911.1|AU236911
EST:     ACTCTACGTCAAATCTGCCAAGGTTTTGTGCCCGAGCATATCTTGCACAG                         AATGGAGGAGATTGGATTTGTCTTCCCCACGGATATTCAAAGAGAAGCTCT
genomic: ACTCTACGTCAAATCTGCCAAGGTTTTGTGCCCGAGCATATCTTGCACAGgcaagcttcg ... attgatgcagAATGGAGGAGATTGGATTTGTCTTCCCCACGGATATTCAAAGAGAAGCTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaattttgaattttgacaagtactaaaaattcgaattttgtgaattgatgcagAATGGAGGAGATTGGATTTGTCTTCCCCACGGATATTCAAAGAGAAGCTCTTCCTACTTTGTTTACAGGCCGTGATTGCATCCTCCATGCTCAA
                         taaaaattcgaatttt  TA-rich tract