Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacgccttttatccctcaattcgcttcttcggttatattccgtatcgtttttgtgggttttctgagctaagtttgtttctgtatacagCTGAGGGATGACATAAGGGATTATGTGAGAATCTTGGTGATTGGTGCGGGTGGGTTGGGTTGTGAGCTTCTCAAGGATTTAGCTCTTTCTGGTTTTCGTA

Basic information

species Arabidopsis thaliana
transcript AT5G19180.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86073136|gb|DR368893.1|DR368893
EST:     TTCTCCGTCATGGGAATCTCGTTGACCCCGGCTTCTTACCCGGACCCGGC                         CTGAGGAATGACATAAGGGATTATGTGAGAATCTTGGTGATTGGTGCGGGT
genomic: TTCTCCGTCATGGGAATCTCGTTGACCCCGGCTTCGTACCCGGACCCGGCgtaaacgcct ... ctgtatacagCTGAGGGATGACATAAGGGATTATGTGAGAATCTTGGTGATTGGTGCGGGT
EST: gi|86072231|gb|DR367988.1|DR367988
EST:     TTCTCCGTCATGGGAATCTCGTTGACCCCGGCTTCTTACCCGGACCCGGC                         CTGAGGAATGACATAAGGGATTATGTGAGAATCTTGGTGATTGGTGCGGGT
genomic: TTCTCCGTCATGGGAATCTCGTTGACCCCGGCTTCGTACCCGGACCCGGCgtaaacgcct ... ctgtatacagCTGAGGGATGACATAAGGGATTATGTGAGAATCTTGGTGATTGGTGCGGGT
EST: gi|124720036|gb|EH811438.1|EH811438
EST:     TCTCGTTGACCCCGGCTTCGTACCCGGACCCGGC                         CTGAGGGATGACATAAGGGATTATGTGAGAATCTTGGTGATTGGTGCGGGT
genomic: TCTCGTTGACCCCGGCTTCGTACCCGGACCCGGCgtaaacgcct ... ctgtatacagCTGAGGGATGACATAAGGGATTATGTGAGAATCTTGGTGATTGGTGCGGGT
EST: gi|86072232|gb|DR367989.1|DR367989
EST:     TTCTCCGTCATGGGAATCTCGTTGACCCCGGCTTCTTACCCGGACCCGGC                         CTGAGGAATGACATAAGGGATTATGTGAGAATCTTGGTGATTGGTGCGGGT
genomic: TTCTCCGTCATGGGAATCTCGTTGACCCCGGCTTCGTACCCGGACCCGGCgtaaacgcct ... ctgtatacagCTGAGGGATGACATAAGGGATTATGTGAGAATCTTGGTGATTGGTGCGGGT
EST: gi|86072230|gb|DR367987.1|DR367987
EST:     TTCTCCGTCATGGGAATCTCGTTGACCCCGGCTTCTTACCCGGACCCGGC                         CTGAGGGATGACATAAGGGATTATGTGAGAATCTTGGTGATTGGTGCGGGT
genomic: TTCTCCGTCATGGGAATCTCGTTGACCCCGGCTTCGTACCCGGACCCGGCgtaaacgcct ... ctgtatacagCTGAGGGATGACATAAGGGATTATGTGAGAATCTTGGTGATTGGTGCGGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatattccgtatcgtttttgtgggttttctgagctaagtttgtttctgtatacagCTGAGGGATGACATAAGGGATTATGTGAGAATCTTGGTGATTGGTGCGGGTGGGTTGGGTTGTGAGCTTCTCAAGGATTTAGCTCTTTCTGGTTTTCGTA
                                      tttgtttct  CT-rich tract
              tttttgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaacgccttttatccctcaattcgcttcttcggttatattccgtatcgtttttgtgggttttctgagctaagtttgtttctgtatacagCTGAGGGATGACATAAGGGATTATGTGAGAATCTTGGTGATTGGTGCGGGTGGGTTGGGTTGTGAGCTTCTCAAGGATTTAGCTCTTTCTGGTTTTCGTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT