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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctttctgcgtcgacatttttaatctctgaggacttgtttgatatctcactcattgagctctggtctgtggtctttgtgtgtttttgtttacagGAACTACTCATGTCACCGGGAAGATCTCAGGACTCTCTCCTGGCTTCCATGGATTTCATATTCACTCTTTTGGTGATACCACAAATGGCTGCATCTCTAC

Basic information

species Arabidopsis thaliana
transcript AT5G18100.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877759|gb|AU238590.1|AU238590
EST:     CGGCGATAACAACGTCCGAGGCTGTCTTCAATTCGTACAAGACATTTCCG                         GAACTACTCATGTCACCGGGAAGATCTCAGGACTCTCTCCTGGCTTCCATG
genomic: CGGCGATAACAACGTCCGAGGCTGTCTTCAATTCGTACAAGACATTTCCGgtctttctgc ... ttgtttacagGAACTACTCATGTCACCGGGAAGATCTCAGGACTCTCTCCTGGCTTCCATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatatctcactcattgagctctggtctgtggtctttgtgtgtttttgtttacagGAACTACTCATGTCACCGGGAAGATCTCAGGACTCTCTCCTGGCTTCCATGGATTTCATATTCACTCTTTTGGTGATACCACAAATGGCTGCATCTCTAC
    atctcac  putative branch site (score: 3)
                                          tttttgttt  putative PPT
                                          tttttgttta  TA-rich tract