1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...taatgccaatataatagttttgttattctcatcttgctcggctgtagttttgctaccattgtaattgttgttactgagtaactcctttttctgtggttagGTCTTGACTAAAGTTCTTGAAAATGGAAGTGGAGAAGTCTAAATCAAGGCATGAAATCAGGGAAGAGAGGGCTGACTACGAGGGTTCGCCTGTTAGAGAA
species | Arabidopsis thaliana |
transcript | AT5G16780.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCGATCCGAATATTCAGTACTTTCCATTGAAGGTTTGATCTAGAG GTCTTGACTAAAGTTCTTGAAAATGGAAGTGGAGAAGTCTAAATCAAGGCA
genomic: GTCGATCCGAATATTCAGTACTTTCCATTGAAGGTTTGATCTAGAGgtaattcgaa ... ctgtggttagGTCTTGACTAAAGTTCTTGAAAATGGAAGTGGAGAAGTCTAAATCAAGGCA
agttttgctaccattgtaattgttgttactgagtaactcctttttctgtggttagGTCTTGACTAAAGTTCTTGAAAATGGAAGTGGAGAAGTCTAAATCAAGGCATGAAATCAGGGAAGAGAGGGCTGACTACGAGGGTTCGCCTGTTAGAGAA
gagtaac putative branch site (score: 2)
ctcctttttctgt CT-rich tract
attgtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatgccaatataatagttttgttattctcatcttgctcggctgtagttttgctaccattgtaattgttgttactgagtaactcctttttctgtggttagGTCTTGACTAAAGTTCTTGAAAATGGAAGTGGAGAAGTCTAAATCAAGGCATGAAATCAGGGAAGAGAGGGCTGACTACGAGGGTTCGCCTGTTAGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - -agttttg
- - - - - - - - gttttgt