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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtctcttctaatgctcttctatctttgtctatcattagattctgtgattgcttacaagttcttaaatacaatttgaagaatctaatgtatagtttgggatttggactaatcatctgatggtttgaggaatgaaatgtagATGGAGATGAAGAAGAAGCTATACCTCTGAGATCTGAAGGGAAAAGCTCTGGAACAGTTTTGCCTTTTGTTGGTGTTGCTTGTCTTGGTGCTATACTCTT

Basic information

species Arabidopsis thaliana
transcript AT5G16150.3
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G16150.3 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv14s0006g02720.t01 (Vitis vinifera), 3'ss of exon 2
gttcgtctcttctaatgctcttctatctttgtctatcattagattctgtgattgcttacaagttcttaaatacaatttgaagaatctaatgtatagtttgggatttggactaatcatctgatggtttgaggaatgaaatgtagATGGAGATGAAGAAGAAGCT-ATACCTCTGAGATCTGAAGGGAAAAGCTCTGGAACAGTTTTGCCTTTTGTTGGTGTTGCTTGTCTTGGTGCTATACTCTT
                              | | |  ||||       | |||| ||   | |     |  |  ||     | ||      | || | |    ||   | ||  ||| ||         | | |||  || || ||||||    || || | | ||  | |||    |  | || |||   ||||||||||||||||| |||||||||||||||||||| || || || || ||
-----------------------------cgac-actattaagaatcttcattgttt---aatcacggaccatgatgcttgggattctccatttactattttcttacaaatag-catttg---------gaattgagttgcagGTGGAGACATTGAGGATGTTGATGTCACTGCTCCCC-AGGGCAAATCTTCTGGAACAGTTTTGCCATTTGTTGGTGTTGCTTGTCTGGGAGCAATTCTGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124763193|gb|EH853323.1|EH853323
EST:     AGCCTCATCTG                         ATGGAGATGAAGAAGAAGCTATACCTCTGAGATCTGAAGGGAAAAGCTCTG
genomic: AGCCTCATCTGgttcgtctct ... tgaaatgtagATGGAGATGAAGAAGAAGCTATACCTCTGAGATCTGAAGGGAAAAGCTCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtatagtttgggatttggactaatcatctgatggtttgaggaatgaaatgtagATGGAGATGAAGAAGAAGCTATACCTCTGAGATCTGAAGGGAAAAGCTCTGGAACAGTTTTGCCTTTTGTTGGTGTTGCTTGTCTTGGTGCTATACTCTT
                                           aatgaaat  TA-rich tract