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...gaagagctttttttttatggtgatttataggtttagatctccaaagtcaagtatgatctttttaataaactcttattctctctttttgagttattttcagCATGCTCAAGACACTTGATCGGTACCAGAAATGCAGCTATGGATCCATTGAAGTCAACAACAAACCTGCCAAAGAACTTGAG
species | Arabidopsis thaliana |
transcript | AT5G15800.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCATCTTCTCCAACCGTGGAAAGCTCTATGAGTTTTGCAGCTCCTCAAA CATGCTCAAGACACTTGATCGGTACCAGAAATGCAGCTATGGATCCATTGAEST: gi|19878650|gb|AU239481.1|AU239481
genomic: ATCATCTTCTCCAACCGTGGAAAGCTCTATGAGTTTTGCAGCTCCTCAAAgtaaacaact ... ttattttcagCATGCTCAAGACACTTGATCGGTACCAGAAATGCAGCTATGGATCCATTGA
EST: ATCATCTTCTCCAACCGTGGAAAGCTCTATGAGTTTTGCAGCTCCTCAAA CATGCTCAAGACACTTGATCGGTACCAGAAATGCAGCTATGGATCCATTGAEST: gi|164223293|gb|ES175836.1|ES175836
genomic: ATCATCTTCTCCAACCGTGGAAAGCTCTATGAGTTTTGCAGCTCCTCAAAgtaaacaact ... ttattttcagCATGCTCAAGACACTTGATCGGTACCAGAAATGCAGCTATGGATCCATTGA
EST: ATCATCTTCTCCAACCGTGGAAAGCTCTATGAGTTTTGCAGCTCCTCAAA CATGCTCAAGACACTTGATCGGTACCAGAAATGEST: gi|86073095|gb|DR368852.1|DR368852
genomic: ATCATCTTCTCCAACCGTGGAAAGCTCTATGAGTTTTGCAGCTCCTCAAAgtaaacaact ... ttattttcagCATGCTCAAGACACTTGATCGGTACCAGAAATG
EST: ATCATCTTCTCCAACCGTGGAAAGCTCTATGAGTTTTGCAGCTCCTCAAA CATGCTCAAGACACTTGATCGGTACCAGAAATGCAGCTATGGATCCATTGAEST: gi|163994764|gb|ES148730.1|ES148730
genomic: ATCATCTTCTCCAACCGTGGAAAGCTCTATGAGTTTTGCAGCTCCTCAAAgtaaacaact ... ttattttcagCATGCTCAAGACACTTGATCGGTACCAGAAATGCAGCTATGGATCCATTGA
EST: TCATCTTCTCCAACCGTGGAAAGCTCTATGAGTTTTGCAGCTCCTCAAA CATGCTCAAGAACACTTGATCGGTACCAGAAATGCAGCTAT
genomic: TCATCTTCTCCAACCGTGGAAAGCTCTATGAGTTTTGCAGCTCCTCAAAgtaaacaact ... ttattttcagCATGCTCAAGA-CACTTGATCGGTACCAGAAATGCAGCTAT
gtcaagtatgatctttttaataaactcttattctctctttttgagttattttcagCATGCTCAAGACACTTGATCGGTACCAGAAATGCAGCTATGGATCCATTGAAGTCAACAACAAACCTGCCAAAGAACTTGAG
ttttaat putative branch site (score: 3)
ttattttc putative PPT
atctttttaataaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagagctttttttttatggtgatttataggtttagatctccaaagtcaagtatgatctttttaataaactcttattctctctttttgagttattttcagCATGCTCAAGACACTTGATCGGTACCAGAAATGCAGCTATGGATCCATTGAAGTCAACAACAAACCTGCCAAAGAACTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - -ggtttag
- - - - - - - - - - - - - - - - - - - ctccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taataaa