1 5' 3' | 2 5' 3' | 3 5' 3' |
...gagaaatagagatagaaatgatagattcttgatgttagtgatcataggcagctaattggaaattcactgtaataatagttgtctcttttgtctgatttagATTGAGCTTCCTCTATGGACAGACATTGTGAAGACTGGTCGTTTGAAGGAGCTTGCTCCATATGACCCTGATTGGTACTACATTAGAGCTG
species | Arabidopsis thaliana |
transcript | AT5G15520.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCACGATTTCGTGAAGGCTTACGCTTCTCACCTCAAGCGATCTGGAAAG ATTGAGCTTCCTCTATGGACAGACATTGTGAAGACTGGTCGTTTGAAGGAGEST: gi|86086060|gb|DR381819.1|DR381819
genomic: CTCACGATTTCGTGAAGGCTTACGCTTCTCACCTCAAGCGATCTGGAAAGgttagtgttt ... tctgatttagATTGAGCTTCCTCTATGGACAGACATTGTGAAGACTGGTCGTTTGAAGGAG
EST: TTACGCTTCTCACCTCAAGCGATCTGGAAAG ATTGAGCTTCCTCTATGGACAGACATTGTGAAGACTGGTCGTTTGAAGGAGEST: gi|86086602|gb|DR382361.1|DR382361
genomic: TTACGCTTCTCACCTCAAGCGATCTGGAAAGgttagtgttt ... tctgatttagATTGAGCTTCCTCTATGGACAGACATTGTGAAGACTGGTCGTTTGAAGGAG
EST: CTCACGATTTCGT-AAGGCTTACGCTTCTCA-CTCAAGCGATCTGGAAAG ATTGAGCTTCCTCTATGG-CAGACATTGTGAAGACTGGTCGTTTGAAGGAG
genomic: CTCACGATTTCGTGAAGGCTTACGCTTCTCACCTCAAGCGATCTGGAAAGgttagtgttt ... tctgatttagATTGAGCTTCCTCTATGGACAGACATTGTGAAGACTGGTCGTTTGAAGGAG
aggcagctaattggaaattcactgtaataatagttgtctcttttgtctgatttagATTGAGCTTCCTCTATGGACAGACATTGTGAAGACTGGTCGTTTGAAGGAGCTTGCTCCATATGACCCTGATTGGTACTACATTAGAGCTG
ttgtctcttttgtct CT-rich tract
taataatagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagaaatagagatagaaatgatagattcttgatgttagtgatcataggcagctaattggaaattcactgtaataatagttgtctcttttgtctgatttagATTGAGCTTCCTCTATGGACAGACATTGTGAAGACTGGTCGTTTGAAGGAGCTTGCTCCATATGACCCTGATTGGTACTACATTAGAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
-agaaata
- - - - - gatagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattca