Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacaatttttatcagttttctgaattccttgttctgggtttccataaagttttgatttttgattggattttggtttatagACGATATGAAACCAGAGGATGTCGGTTTAACTCCGACCATGCCGTATTTCCGACCAAACTCCGGAGTCGAAGCTCGGTCTTCGCCACCAATAACGTATCT

Basic information

species Arabidopsis thaliana
transcript AT5G15120.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116467253|gb|EG509845.1|EG509845
EST:     TGGTGTTATTCCTTCTGAAGATAAAATCCAACAGCTACGAGAGATTCTTG                         ACGATATGAAACCAGAGGATGTCGGTTTAACTCCGACCATGCCGTATTTCC
genomic: TGGTGTTATTCCTTCTGAAGATAAAATCCAACAGCTACGAGAGATTCTTGgtatacaatt ... tggtttatagACGATATGAAACCAGAGGATGTCGGTTTAACTCCGACCATGCCGTATTTCC
EST: gi|164065851|gb|ES011557.1|ES011557
EST:     CCAACAGCTACGAGAGATTCTTG                         ACGATATGAAACCAGAGGATGTCGGTTTAACTCCGACCATGCCGTATTTCC
genomic: CCAACAGCTACGAGAGATTCTTGgtatacaatt ... tggtttatagACGATATGAAACCAGAGGATGTCGGTTTAACTCCGACCATGCCGTATTTCC
EST: gi|116471642|gb|EG514234.1|EG514234
EST:     TGGTGTTATTCCTTCTGAAGATAAAATCCAACAGCTACGAGAGATTCTTG                         ATGATATGAAACCAGAGGATGTCGGTTTAACTCCGACCATGCCGTATTTCC
genomic: TGGTGTTATTCCTTCTGAAGATAAAATCCAACAGCTACGAGAGATTCTTGgtatacaatt ... tggtttatagACGATATGAAACCAGAGGATGTCGGTTTAACTCCGACCATGCCGTATTTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccttgttctgggtttccataaagttttgatttttgattggattttggtttatagACGATATGAAACCAGAGGATGTCGGTTTAACTCCGACCATGCCGTATTTCCGACCAAACTCCGGAGTCGAAGCTCGGTCTTCGCCACCAATAACGTATCT
                               ttttgat  putative branch site (score: 4)
                  ataaagttttgatttt  TA-rich tract