1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctctcaacttcagatccttgagaacattaaaaaccaaaacaacttcatagcttcttgattcagctctataaatgttgcttctctgcttttgtatttgtagGTACGATTACTCCGGGTATGGACAATCTACTGGAAAG
species | Arabidopsis thaliana |
transcript | AT5G14390.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TAAGGTTAATCTCATGGG GTACGATTACTCCGGGTATGGACAATCTACTGGAAAGEST: gi|124803131|gb|EH891560.1|EH891560
genomic: TAAGGTTAATCTCATGGGgtatgttaaa ... gtatttgtagGTACGATTACTCCGGGTATGGACAATCTACTGGAAAG
EST: GAGCATCCATCTTAAGGTTAATCTCATGGG GTACGATTACTCCGGGTATGGACAATCTACTGGAAAG
genomic: GAGCATCCATCTTAAGGTTAATCTCATGGGgtatgttaaa ... gtatttgtagGTACGATTACTCCGGGTATGGACAATCTACTGGAAAG
catagcttcttgattcagctctataaatgttgcttctctgcttttgtatttgtagGTACGATTACTCCGGGTATGGACAATCTACTGGAAAG
tcttgat putative branch site (score: 4)
cttctctgcttttgt putative PPT
tataaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctcaacttcagatccttgagaacattaaaaaccaaaacaacttcatagcttcttgattcagctctataaatgttgcttctctgcttttgtatttgtagGTACGATTACTCCGGGTATGGACAATCTACTGGAAAG
- ctcaact
- - - - - - - - - -gagaaca
- - - - - - - - - - - - - -taaaaac
- - - - - - - - - - - - - - - - - -aaaacaa