1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttagatctgaatcttcttttgtcgaactccatgaacatatgtcgattgtcgcattgcttaagtcgataaatatctaatttcttctgatctggaattgtagCTTGATAAACCTGAGGTTGAAGATGATGATGACAATGATGAGGATGATTCCGAGGACGATGACGAGGCGGAGG
species | Arabidopsis thaliana |
transcript | AT5G13850.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGAACAGAAAGTGGAGCTCGCCGCCAAATTGGAAGAGCAGAAGATACGAT CTTGATAAACCTGAGGTTGAAGATGAEST: gi|125089054|gb|EL147568.1|EL147568
genomic: CGAACAGAAAGTGGAGCTCGCCGCCAAATTGGAAGAGCAGAAGAT-CGATgtaattatct ... ggaattgtagCTTGATAAACCTGAGGTTGAAGATGA
EST: CTCGCCGCCAAATTGGAAGAGCAGAAGATCGAT CTTGATAAACCTGAGGTTGAAGATGATGATGACAATGATGAGGATGATTCC
genomic: CTCGCCGCCAAATTGGAAGAGCAGAAGATCGATgtaattatct ... ggaattgtagCTTGATAAACCTGAGGTTGAAGATGATGATGACAATGATGAGGATGATTCC
ttgtcgcattgcttaagtcgataaatatctaatttcttctgatctggaattgtagCTTGATAAACCTGAGGTTGAAGATGATGATGACAATGATGAGGATGATTCCGAGGACGATGACGAGGCGGAGG
ttctgat putative branch site (score: 3)
ataaatatctaatttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagatctgaatcttcttttgtcgaactccatgaacatatgtcgattgtcgcattgcttaagtcgataaatatctaatttcttctgatctggaattgtagCTTGATAAACCTGAGGTTGAAGATGATGATGACAATGATGAGGATGATTCCGAGGACGATGACGAGGCGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - ctgaatc
- - - - - - - - - - - - aactcca
- - - - - - - - - - - - - - - - gaacata