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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttccttttatttccttaggccccactatgctaggtgattcttcagtactgattgttttttgttacaatagGATGCTTGTGGTGGTACCAGCTGCTTTGTAATTGAAAACTATGATGGCCCGGGACGAATTGGACCTGAAATTCT

Basic information

species Arabidopsis thaliana
transcript AT5G13690.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116415708|gb|EG458300.1|EG458300
EST:     GACTGCTTCCCACCCATTCTCAGAGCTTTGAGCTCAGAATTATCTCAAAG                         GATGCTTGTGGTGGTACCAGCTGCTTTGTAATTGAAAACTATGATGGCCCG
genomic: GACTGCTTCCCACCCATTCTCAGAGCTTTGAGCTCAGAATTATCTCAAAGgttcttcctt ... gttacaatagGATGCTTGTGGTGGTACCAGCTGCTTTGTAATTGAAAACTATGATGGCCCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggccccactatgctaggtgattcttcagtactgattgttttttgttacaatagGATGCTTGTGGTGGTACCAGCTGCTTTGTAATTGAAAACTATGATGGCCCGGGACGAATTGGACCTGAAATTCT
                              tactgat  putative branch site (score: 2)
                                       ttttttgtt  putative PPT
                                       ttttttgttacaata  TA-rich tract