1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaatttcatcaatcgagtgtttttcttcttttttctgtggatagtgaagcgattgggctcgaattgattttcggtaactgatgctttgtgatggggttttgtttcagTCGATTTGTTTTGAATGTCCCTGAAGAAGATCAACAGTCATTCGAGAGAATTTTGTTTCTGGTGGAGTATGCTTATTGGTACTATGAAGATAATGCTGTA
species | Arabidopsis thaliana |
transcript | AT5G13570.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AACATCGGAAATTGCCTTCCCTCCAAAGAACTCCTTGATGATCTTTGCAG TCGATTTGTTTTGAATGTCCCTGAAGAAGATCAACAGTCATTCGAGAGEST: gi|164148968|gb|ES132628.1|ES132628
genomic: AACATCGGAAATTGCCTTCCCTCCAAAGAACTCCTTGATGATCTTTGCAGgtaatttcat ... tttgtttcagTCGATTTGTTTTGAATGTCCCTGAAGAAGATCAACAGTCATTCGAGAG
EST: AACATCGGAAATTGCCTTCCCTCCAAAGAACTCCTTGATGATCTTTGCAG TCGATTTGTTTTGAATGTCCCEST: gi|164165096|gb|ES130319.1|ES130319
genomic: AACATCGGAAATTGCCTTCCCTCCAAAGAACTCCTTGATGATCTTTGCAGgtaatttcat ... tttgtttcagTCGATTTGTTTTGAATGTCCC
EST: AACATCGGAAATTGCCTTCCCTCCAAAGAACTCCTTGATGATCTTTGCAG TCGATTTGTTTTGAATGTCCCTGAAGAAG
genomic: AACATCGGAAATTGCCTTCCCTCCAAAGAACTCCTTGATGATCTTTGCAGgtaatttcat ... tttgtttcagTCGATTTGTTTTGAATGTCCCTGAAGAAG
ttgggctcgaattgattttcggtaactgatgctttgtgatggggttttgtttcagTCGATTTGTTTTGAATGTCCCTGAAGAAGATCAACAGTCATTCGAGAGAATTTTGTTTCTGGTGGAGTATGCTTATTGGTACTATGAAGATAATGCTGTA
aactgat putative branch site (score: 3)
ttttgtttc putative PPT
aattgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttcatcaatcgagtgtttttcttcttttttctgtggatagtgaagcgattgggctcgaattgattttcggtaactgatgctttgtgatggggttttgtttcagTCGATTTGTTTTGAATGTCCCTGAAGAAGATCAACAGTCATTCGAGAGAATTTTGTTTCTGGTGGAGTATGCTTATTGGTACTATGAAGATAATGCTGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG