1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaatttccctcttattgcactctgattttcaaatcaagtttcaacttttataaattgttaatctttaattgtgtcagGGTATGAGGCGTTTCCGACAGTGATGGACATCAATAAGATACAAGAGATTTTGCCTCACAG
species | Arabidopsis thaliana |
transcript | AT5G10160.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AACTGATGAATCAAAGAGCACCGCAGAGAAAGAGATCCCAATCGAACTAA GGTATGAGGCGTTTCCGACAGTGATGGACATCAATAAGATACAAGAGATTTEST: gi|152035688|gb|BP861083.2|BP861083
genomic: AACTGATGAATCAAAGAGCACCGCAGAGAAAGAGATCCCAATCGAACTAAgtaatttccc ... attgtgtcagGGTATGAGGCGTTTCCGACAGTGATGGACATCAATAAGATACAAGAGATTT
EST: ACTGATGAATCAAAGAGCACCGCAGAGAAAGAGATCCCAACTCGAACTAA GGTATGAGGCGTTTCCGACAGTGATGGACATCAATAAGATACAAGAGATT
genomic: ACTGATGAATCAAAGAGCACCGCAGAGAAAGAGATCCCAA-TCGAACTAAgtaatttccc ... attgtgtcagGGTATGAGGCGTTTCCGACAGTGATGGACATCAATAAGATACAAGAGATT
tgattttcaaatcaagtttcaacttttataaattgttaatctttaattgtgtcagGGTATGAGGCGTTTCCGACAGTGATGGACATCAATAAGATACAAGAGATTTTGCCTCACAG
aagtttcaacttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttccctcttattgcactctgattttcaaatcaagtttcaacttttataaattgttaatctttaattgtgtcagGGTATGAGGCGTTTCCGACAGTGATGGACATCAATAAGATACAAGAGATTTTGCCTCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA