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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcgggttctgttttgttctctctcttcatccgtgtgccgaaacttgagaagaatttggattttttttgaaactgaatttgttatgaaattcgcagGTTCCAATTTCGAACATCAGGAATTTTAGTATTATAGCTCATATTGATCATGGGAAATCTACGTTAGCGGATAAGTTGCTTCAGGTGACTGGTACTGTTC

Basic information

species Arabidopsis thaliana
transcript AT5G08650.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G08650.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: LOC_Os02g06300.1 (Oryza sativa), 3'ss of exon 1
------------------------------------------gtc-gggttctgttttgttctctctcttcatccgtgtgccgaaacttgagaagaatttg-------gattttttttgaaactgaatt--tgttatga--------aattcg-----------------cagGTTCCAATTTCGAACATCAGGAATTTTAGTATTATAGCTCATATTGATCATGGGAAATCTACGTTAGCGGATAAGTTGCTTCAGGTGACTGGTACTGTTC
                                          |||  ||  |   ||||  ||  |||      ||    |  ||    | | ||| ||||       ||| ||  ||  || ||  ||  |||| |||         |||||                  |||||||  |||||||||||||||| || || ||||| || ||||| || ||||||||||| ||| | ||||||||  ||||| || | || || || || |
gtagtcgccccatcgcgcgcctcgcttgttagtatcacttaggtctaggcgcgcctttgggcttgctcgagtgacgaacacgaaattcagggtagagtttgcgattccgatattcgtttcaagtgcgttgctgttgtgattgatctcgattcgtcggtgttctgctctactagGTTCCCGTTTCGAACATCAGGAACTTCAGCATTATTGCGCATATCGACCATGGGAAATCGACGCTGGCGGATAAACTGCTTGAGCTCACGGGGACGGTGC

upper sequence: AT5G08650.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA06G16700.1 (Glycine max), 3'ss of exon 1
gtcgggttctgttttgttctctctcttcatccgtgtgccgaaacttgagaagaat--ttggattttttttgaaactgaatttgttatgaaattcgcagGTTCCAATTTCGAACATCAGGAATTTTAGTATTATAGCTCATATTGATCATGGGAAATCTACGTTAGCGGATAAGTTGCTTCAGGTGACTGGTACTGTTC
    |  ||     |  |  |     || |   | |  | ||| |         |  | | ||  |   | |||   | |||| | ||   ||   |||| ||  |    || || ||||| ||  | || || || |||||||| || |||||||| ||||| |||||||||||||||||||| || || || || |
----gtatcatcgctactagccactctcgtgtttttttccaaattgcccctcgttcgtagaatcgtagctaaaagctactttggtttgtgtttt--agGTGCCGGTGCGTAATATAAGGAACTTCTGCATCATTGCGCATATTGACCACGGGAAATCCACGTTGGCGGATAAGTTGCTTCAGGTTACCGGCACGGTGC

upper sequence: AT5G08650.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA04G38360.1 (Glycine max), 3'ss of exon 1
gtcgggttctgttttgttctctctcttcatc-cgtgtgccgaaacttgagaagaatttggatttttt--ttgaaactgaatttgttatg---aaattcgcagGTTCCAATTTCGAACATCAGGAATTTTAGTATTATAGCTCATATTGATCATGGGAAATCTACGTTAGCGGATAAGTTGCTTCAGGTGACTGGTACTGTTC
   |  |  |   |  | ||| || ||  ||  || |  |  || ||        || | |  |  |  |  || ||   || |||  |      ||  ||||| ||  |    || || ||||| ||  | || || || |||||||| || |||||||| ||||| |||||||||||||||||||| || || || || |
---gtatcatcgctactactcactatttctcgtgtttttcccaaattagccctcgttcgtagctactagtacaagctcgtttggttcggttttggttttcagGTGCCGGTGCGTAATATAAGGAACTTCTGCATCATTGCGCATATTGACCACGGGAAATCCACGTTGGCGGATAAGTTGCTTCAGGTTACCGGCACGGTGC

upper sequence: AT5G08650.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv07s0031g03050.t01 (Vitis vinifera), 3'ss of exon 1
gtcgggttctgttttgttctctctcttcatccgtgtgccgaaacttgagaa---gaatttggattttttttgaa-actgaatttgttatgaaattcgcagGTTCCAATTTCGAACATCAGGAATTTTAGTATTATAGCTCATATTGATCATGGGAAATCTACGTTAGCGGATAAGTTGCTTCAGGTGACTGGTACTGTTC
|     ||    |||  |  |    ||  |    |||   |   ||        ||  | ||| | ||  ||||  ||   |||||| |  ||   |||||||||||| || || |||||||||||  | || || ||||||||||||||||||||||| || ||||| ||||||||||| ||  |||| ||||| || |
gggactttacactttactggcaaaattattgatggtgttaaggttttgttttttgacatgggaatcttactgaatgctatttttgttgtttaaaatgcagGTTCCAATATCAAATATCAGGAATTTCTGCATAATTGCTCATATTGATCATGGGAAATCAACTTTAGCAGATAAGTTGCTGCAAATGACGGGTACGGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacttgagaagaatttggattttttttgaaactgaatttgttatgaaattcgcagGTTCCAATTTCGAACATCAGGAATTTTAGTATTATAGCTCATATTGATCATGGGAAATCTACGTTAGCGGATAAGTTGCTTCAGGTGACTGGTACTGTTC
                  attttttttgaaactg  TA-rich tract