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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctggattctcttgtcacttgtgatttgcgtgtttcttctcttgcgaatattttttgcctaatctggtttctccaacagTTTAGGGATTCTGGATGCGAGAACTGTCCTTTCTTCAAAATAGAAGACGATCATGAACGCATCGTCGATGTTACAACTCCCAACTTCAATGG

Basic information

species Arabidopsis thaliana
transcript AT5G08565.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152035983|gb|AU236926.2|AU236926
EST:     ACGAGCTTAGGGCTTGTCTTCGATGCCGCCTCGTCAAGACCTACGATCAG                         TTTAGGGATTCTGGATGCGAGAACTGTCCTTTCTTCAAAATAGAAGACGAT
genomic: ACGAGCTTAGGGCTTGTCTTCGATGCCGCCTCGTCAAGACCTACGATCAGgtctggattc ... tctccaacagTTTAGGGATTCTGGATGCGAGAACTGTCCTTTCTTCAAAATAGAAGACGAT
EST: gi|86085973|gb|DR381732.1|DR381732
EST:     ACGAGCTTAGGGCTTGTCTTCGATGCCGCCTCGTCAAGACCTACGATCAG                         TTTAGGGATTCTGGATGCGAGAACTGTCCTTTCTTCAAAATWGAAGACGAT
genomic: ACGAGCTTAGGGCTTGTCTTCGATGCCGCCTCGTCAAGACCTACGATCAGgtctggattc ... tctccaacagTTTAGGGATTCTGGATGCGAGAACTGTCCTTTCTTCAAAATAGAAGACGAT
EST: gi|164160751|gb|ES029470.1|ES029470
EST:     GCCGCCTCGTCAAGACCTACGATCAG                         TTTAGGGATTCTGGATGCGAGAACTGTCCTTTCTTCAAAATAGAAGACGAT
genomic: GCCGCCTCGTCAAGACCTACGATCAGgtctggattc ... tctccaacagTTTAGGGATTCTGGATGCGAGAACTGTCCTTTCTTCAAAATAGAAGACGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgcgtgtttcttctcttgcgaatattttttgcctaatctggtttctccaacagTTTAGGGATTCTGGATGCGAGAACTGTCCTTTCTTCAAAATAGAAGACGATCATGAACGCATCGTCGATGTTACAACTCCCAACTTCAATGG
                                gcctaat  putative branch site (score: 3)
                                           tttctcc  putative PPT
                      aatatttttt  TA-rich tract