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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttactggatcttgagatgttgaaatgatgaagttatgtgattgagagtttgagatacaagattttgatatgattgtgttttggttgatatatacttgaagATTGGAGAAGTTAGGAGCACTTGAGTGGAGCAAAGTTGTGGAGAAGAAGGAAGGTTGGCGTCTCTTGACATGTATATGGTTACACGCGGGTGTTATTCAT

Basic information

species Arabidopsis thaliana
transcript AT5G07250.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G07250.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv16s0100g00640.t01 (Vitis vinifera), 3'ss of exon 1
ttactggatcttgagatgttgaaatgatgaagttatgtgattgagagtttgagatacaagattttgatatgattgtgttttggttga---tatatacttgaagATTGGAGAAGTTAGGAGCACTTGAGTGGAGCAAAGTTGTGGAGAAGAAGGAAGGTTGGCGTCTCTTGACATGTATATGGTTACACGCGGGTGTTATTCAT
  |    ||  | |  || |  | | || |   |||| | || | |   |    ||  |   ||  |   | |||   |    ||||   | |||  |||||||||||| ||||| ||||| ||||||||||  ||||||||    ||| |  |||| ||| | ||  | || || || |||||||| || ||| | ||||||
aaaaaaaattataaattggtttagtcattactctatgagctttataaactctcttatca---ttaaaggaggttgaactgaaattgagtttttatttttgaagATTGGAAAAGTTGGGAGCTCTTGAGTGGAAAAAAGTTGTCAGTAAGCATCAAGGATGGAGGCTTGTCACTTGCATCTGGTTACATGCTGGTATCATTCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47831274|gb|CK120958.1|CK120958
EST:     TCCTTTGAGCCTCTCCGAACTAATCCTCTCTTTGGTCCATCTTCTCACAC                         ATTGGAGAAGTTAGGAGCACTTGAGTGGAGCAAAGTTGTGGAGAAGAAGGA
genomic: TCCTTTGAGCCTCTCCGAACTAATCCTCTCTTTGGTCCATCTTCTCACACgtacgttttc ... atacttgaagATTGGAGAAGTTAGGAGCACTTGAGTGGAGCAAAGTTGTGGAGAAGAAGGA
EST: gi|124912294|gb|EH986374.1|EH986374
EST:     TCCTTTGAGCCTCTCCGAACTAATCCTCTCTTTGGTCCATCTTCTCACAC                         ATTGGAGAAGTTAGGAG
genomic: TCCTTTGAGCCTCTCCGAACTAATCCTCTCTTTGGTCCATCTTCTCACACgtacgttttc ... atacttgaagATTGGAGAAGTTAGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtttgagatacaagattttgatatgattgtgttttggttgatatatacttgaagATTGGAGAAGTTAGGAGCACTTGAGTGGAGCAAAGTTGTGGAGAAGAAGGAAGGTTGGCGTCTCTTGACATGTATATGGTTACACGCGGGTGTTATTCAT
               attttgatatgatt  TA-rich tract