1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaattgcgtctgcgttctctggttcaatgccttgtttatatgatttgtgttcaatatctagaattgttgggttaatgtttatgcaaatgtctctgtctctctgtgcttttgttaaaaacgagttcacaatgataaaggtatcgtttttaattgttagGAGTTTTGGAGAACAGAAGTTAAAAAAGAAATGAGGCCAAAAGCAGTGTGGGAGCCTGAGTATCACAGAGTGTTTGTTGATTTATGTGTGGAGCAAACGA
species | Arabidopsis thaliana |
transcript | AT5G05800.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCGAAGTCTCAGGTCGCAAAATCATATTTTTCCCTGAAACACGTTTCAA GAGTTTTGGAGAACAGAAGTTAAAAAAGAAATGAGGCCAAAAGCAGTGTGG
genomic: GGCGAAGTCTCAGGTCGCAAAATCATATTTTTCCCTGAAACACGTTTCAAgtaattgcgt ... taattgttagGAGTTTTGGAGAACAGAAGTTAAAAAAGAAATGAGGCCAAAAGCAGTGTGG
gtgcttttgttaaaaacgagttcacaatgataaaggtatcgtttttaattgttagGAGTTTTGGAGAACAGAAGTTAAAAAAGAAATGAGGCCAAAAGCAGTGTGGGAGCCTGAGTATCACAGAGTGTTTGTTGATTTATGTGTGGAGCAAACGA
ttttaat putative branch site (score: 3)
tcgttttt CT-rich tract
tttttaattgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattgcgtctgcgttctctggttcaatgccttgtttatatgatttgtgttcaatatctagaattgttgggttaatgtttatgcaaatgtctctgtctctctgtgcttttgttaaaaacgagttcacaatgataaaggtatcgtttttaattgttagGAGTTTTGGAGAACAGAAGTTAAAAAAGAAATGAGGCCAAAAGCAGTGTGGGAGCCTGAGTATCACAGAGTGTTTGTTGATTTATGTGTGGAGCAAACGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA