Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcaactaatcctcatgcttcatctgcctacttcaagtgttttgatctctctctatattgttaaccaagtattcatgttgtttaccttgcagCGGACATGGTAGCTTCTCGAATGATCCGAGGCTGAACAGTGTGGCTGGTCATCTTCTTCATTCCTCAATTCTGGTCCCTTACCATGGCTG

Basic information

species Arabidopsis thaliana
transcript AT5G05580.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125178697|gb|EL197001.1|EL197001
EST:     CCTTGGCCATGACTG                         CGGACATGGTAGCTTCTCGAATGATCCGAGGCTGAACAGTGTGGCTAGGTC
genomic: CCTTGGCCATGACTGgtatcaacta ... taccttgcagCGGACATGGTAGCTTCTCGAATGATCCGAGGCTGAACAGTGTGGCT-GGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttgatctctctctatattgttaaccaagtattcatgttgtttaccttgcagCGGACATGGTAGCTTCTCGAATGATCCGAGGCTGAACAGTGTGGCTGGTCATCTTCTTCATTCCTCAATTCTGGTCCCTTACCATGGCTG
                     tgttaac  putative branch site (score: 2)
                                           tttacctt  putative PPT
                tatattgttaa  TA-rich tract