Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtaatctccaaccatttctttcttttgaagaattgtttgattcatttaattttgatttgtggtgttttcagGGTTTTGATGTGGACTTCTCGAAAGTGCGTCACAGATTTGGTCGCGGAGCTGTTCATCTCGACGACGACAATATGGTTAGCGAGCCTCATGAGACCAACA

Basic information

species Arabidopsis thaliana
transcript AT5G05060.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124886413|gb|EH965315.1|EH965315
EST:     CTTTGTCAGATGATCTTCGACTGTTAGATGAAGAGTGGGGCAAGAGCGGG                         GGTTTTGATGTGGACTTCTCGAAAGTGCGTCACAGATTTGGTCGCGGAG
genomic: CTTTGTCAGATGATCTTCGACTGTTAGATGAAGAGTGGGGCAAGAGCGGGgtttgtaatc ... gtgttttcagGGTTTTGATGTGGACTTCTCGAAAGTGCGTCACAGATTTGGTCGCGGAG
EST: gi|152033884|gb|BP819033.2|BP819033
EST:     CTTTGTCAGATGATCTTCGACTGTTAGATGAAGAGTGGGGCAAGAGCGGG                         GGTTTTGATGTGGACTTCTCGAAAGTGCGTCACAGATTTGGTCGCGGAGCT
genomic: CTTTGTCAGATGATCTTCGACTGTTAGATGAAGAGTGGGGCAAGAGCGGGgtttgtaatc ... gtgttttcagGGTTTTGATGTGGACTTCTCGAAAGTGCGTCACAGATTTGGTCGCGGAGCT
EST: gi|116480078|gb|EG522670.1|EG522670
EST:     CTTTGTCAGATGATCTTCGACTGTTAGATGAAGAGTGGGGCAAGAGCGGG                         GGTTTTGATGTGGACTTCTCGAAAGTGCGTCACAGATTTGGTCGCGGAGCT
genomic: CTTTGTCAGATGATCTTCGACTGTTAGATGAAGAGTGGGGCAAGAGCGGGgtttgtaatc ... gtgttttcagGGTTTTGATGTGGACTTCTCGAAAGTGCGTCACAGATTTGGTCGCGGAGCT
EST: gi|125172714|gb|EL194749.1|EL194749
EST:     GAGTGGGGCAAGAGCGGG                         GGTTTTGATGTGGACTTCTCGAAAGTGCGTCACAGATTTGGTCGCGGAGCT
genomic: GAGTGGGGCAAGAGCGGGgtttgtaatc ... gtgttttcagGGTTTTGATGTGGACTTCTCGAAAGTGCGTCACAGATTTGGTCGCGGAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttcttttgaagaattgtttgattcatttaattttgatttgtggtgttttcagGGTTTTGATGTGGACTTCTCGAAAGTGCGTCACAGATTTGGTCGCGGAGCTGTTCATCTCGACGACGACAATATGGTTAGCGAGCCTCATGAGACCAACA
                                 ttttgat  putative branch site (score: 4)
                                              tgttttc  putative PPT
              aattgtttgattcatt  TA-rich tract