1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggtagtttggtttctctatgtaccgattccaaattcttctttgtatgatgtatctgaggttgctgatatatctttccgtgcttgttcgttttgtatgcagTATTAAAAACCGTGTATATGCTTCGATTAACAGCATTGATTCGGCCGCTACTCCATCGTATCCG
species | Arabidopsis thaliana |
transcript | AT5G04740.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGTCTCTCTTGACGAAGAG TATTAAAAACCGTGTATATGCTTCGATTAACAGCATTGATTCGGCCGCTACEST: gi|124831475|gb|EH915914.1|EH915914
genomic: TGTCTCTCTTGACGAAGAGgttaggctct ... ttgtatgcagTATTAAAAACCGTGTATATGCTTCGATTAACAGCATTGATTCGGCCGCTAC
EST: CGGAAGTTCGTCGGAGGTGTAATGTCTCTCTTGACGAAAAG TATTAAAAACCGTGTATATGCTTCGATTAACAGCATTGATTCGGCCGCTAC
genomic: CGGAAGTTCGTCGGAGGTGTAATGTCTCTCTTGACGAAGAGgttaggctct ... ttgtatgcagTATTAAAAACCGTGTATATGCTTCGATTAACAGCATTGATTCGGCCGCTAC
tgatgtatctgaggttgctgatatatctttccgtgcttgttcgttttgtatgcagTATTAAAAACCGTGTATATGCTTCGATTAACAGCATTGATTCGGCCGCTACTCCATCGTATCCG
tgctgat putative branch site (score: 3)
ttcgtttt putative PPT
atatatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtagtttggtttctctatgtaccgattccaaattcttctttgtatgatgtatctgaggttgctgatatatctttccgtgcttgttcgttttgtatgcagTATTAAAAACCGTGTATATGCTTCGATTAACAGCATTGATTCGGCCGCTACTCCATCGTATCCG
- -agtttgg
- - - - - - -ctctatg
- - - - - - - - - - - - - - ccaaatt