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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttccttcgatactttctcttactaccaccattgtttcgatttcgtatcagactctttagggttttacattgaatctctctgtatgggtttttgttgatagCCACTAGAAGGAGGTCCAGCTCGAAAAGCTCCAGTTACCACCCCACCTCTTCAGAATAAAGCTACTGTGCTATACATCGGTAGAATCCCTCATGGCTTCT

Basic information

species Arabidopsis thaliana
transcript AT5G04600.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86067155|gb|DR362912.1|DR362912
EST:     CTTCTCAGCTACCTCTTCCCCAGAACCCGAAACCTTCAGCTGATTTTTTG                         CCACTAGAAGGAGGTCCAGCTCGAAAAGCTCCAGTTACCACCCCACCTCTT
genomic: CTTCTCAGCTACCTCTTCCCCAGAACCCGAAACCTTCAGCTGATTTTTTGgtatttcctt ... ttgttgatagCCACTAGAAGGAGGTCCAGCTCGAAAAGCTCCAGTTACCACCCCACCTCTT
EST: gi|86067156|gb|DR362913.1|DR362913
EST:     CTTCTCAGCTACCTCTTCCCCAGAACCCGAAACCTTCAGCTGATTTTTTG                         CCACTAGAAGGAGGTCCAGCTCGAAAAGCTCCAGTTACCACCCCACCTCTT
genomic: CTTCTCAGCTACCTCTTCCCCAGAACCCGAAACCTTCAGCTGATTTTTTGgtatttcctt ... ttgttgatagCCACTAGAAGGAGGTCCAGCTCGAAAAGCTCCAGTTACCACCCCACCTCTT
EST: gi|86067154|gb|DR362911.1|DR362911
EST:     CTTCTCAGCTACCTCTTCCCCAGAACCCGAAACCTTCAGCTGATTTTTTG                         CCACTAGAAGGAGGTCCAGCTCGAAAAGCTCCAGTTACCACCCCACCTCTT
genomic: CTTCTCAGCTACCTCTTCCCCAGAACCCGAAACCTTCAGCTGATTTTTTGgtatttcctt ... ttgttgatagCCACTAGAAGGAGGTCCAGCTCGAAAAGCTCCAGTTACCACCCCACCTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcagactctttagggttttacattgaatctctctgtatgggtttttgttgatagCCACTAGAAGGAGGTCCAGCTCGAAAAGCTCCAGTTACCACCCCACCTCTTCAGAATAAAGCTACTGTGCTATACATCGGTAGAATCCCTCATGGCTTCT
                                          tttttgtt  CT-rich tract
                ttttacatt  TA-rich tract