1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...attgcttttgcgctatgatagatagaagagattgcaatactcttaggaaaagcattgtcctgtttctcattaacacttctctgctcgttgttactgtcagCTGCTCTCACCCAACTAGGCGAAAAGACAACTCTTGTATCACCTGAGATGATAGTTGCATCTGGCATTCCCTGCTGTAG
species | Arabidopsis thaliana |
transcript | AT5G04240.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
ggaaaagcattgtcctgtttctcattaacacttctctgctcgttgttactgtcagCTGCTCTCACCCAACTAGGCGAAAAGACAACTCTTGTATCACCTGAGATGATAGTTGCATCTGGCATTCCCTGCTGTAG
cattaac putative branch site (score: 2)
tcattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgcttttgcgctatgatagatagaagagattgcaatactcttaggaaaagcattgtcctgtttctcattaacacttctctgctcgttgttactgtcagCTGCTCTCACCCAACTAGGCGAAAAGACAACTCTTGTATCACCTGAGATGATAGTTGCATCTGGCATTCCCTGCTGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- -gcttttg
- - - - - - - - - - - - gaagaga
- - - - - - - - - - - - - - - - - - - -ctcttag
- - - - - - - - - - - - - - - - - - - - - - - -aaaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttaacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctctgc