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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcctctttctctttctcttaatttgctgtgctctgtgacgccattgttgtaactgactgtaataattgatgattagcgagttcattcgtctattggactagcttcatgaactgtactgtcttttctttcgctggggaatacctcttgattagatccatgtctgtagGGAAGATCTTTGCTGGGAAACAATCTGCGGAGTTTGATTCTTCGTCACAAGCTATCTCTGCTTCTGAGAAAGTCTTAGTACCTGATAATCTTGATGATGA

Basic information

species Arabidopsis thaliana
transcript AT5G03650.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116483369|gb|EG525961.1|EG525961
EST:     TGCCGGCAATTCCACCCTCTCTTTCTTCTTCAAAAAGCACCCTCTCCCTC                         GGAAGATCTTTGCTGGGAAACAATCTGCGGAGTTTGATTCTTCGTCACAAG
genomic: TGCCGGCAATTCCACCCTCTCTTTCTTCTTCAAAAAGCACCCTCTCTCTCgtacgcctct ... atgtctgtagGGAAGATCTTTGCTGGGAAACAATCTGCGGAGTTTGATTCTTCGTCACAAG
EST: gi|116412441|gb|EG455033.1|EG455033
EST:     TGCCGGCAATTCCACCCTCTCTTTCTTCTTCAAAAAGCACCCTCTCTCTC                         GGAAGATCTTTGCTGGGAAACAATCTGCGGAGTTTGATTCTTCGTCACAAG
genomic: TGCCGGCAATTCCACCCTCTCTTTCTTCTTCAAAAAGCACCCTCTCTCTCgtacgcctct ... atgtctgtagGGAAGATCTTTGCTGGGAAACAATCTGCGGAGTTTGATTCTTCGTCACAAG
EST: gi|164067912|gb|ES124435.1|ES124435
EST:     ATTCCACCCTCTCTTTCTTCTTCAAAAAGCACCCTCTCTCTC                         GGAAGATCTTTGCTGGGAAACAATCTGCGGAGTTTGATTCTTCGTCACAAG
genomic: ATTCCACCCTCTCTTTCTTCTTCAAAAAGCACCCTCTCTCTCgtacgcctct ... atgtctgtagGGAAGATCTTTGCTGGGAAACAATCTGCGGAGTTTGATTCTTCGTCACAAG
EST: gi|116436516|gb|EG479108.1|EG479108
EST:     TGCCGGCAATTCCACCCTCTCTTTCTTCTTCAAAAAGCACCCTCTCTCTC                         GGAAGATCTTTGCTGGGAAACAATCTGCGGAGTTTGATTCTTCGTCACAAG
genomic: TGCCGGCAATTCCACCCTCTCTTTCTTCTTCAAAAAGCACCCTCTCTCTCgtacgcctct ... atgtctgtagGGAAGATCTTTGCTGGGAAACAATCTGCGGAGTTTGATTCTTCGTCACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtactgtcttttctttcgctggggaatacctcttgattagatccatgtctgtagGGAAGATCTTTGCTGGGAAACAATCTGCGGAGTTTGATTCTTCGTCACAAGCTATCTCTGCTTCTGAGAAAGTCTTAGTACCTGATAATCTTGATGATGA
                               tcttgat  putative branch site (score: 4)
         ttttcttt  TA-rich tract