1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cgtgcagcaaaacagttgggagcaaaattaccgtacctctggagaactcacggaaaaaagaaagttaaactaaacagaggaatgaattttgcgttcggagGGTCCGAAGTGTTTGACTCTCCGGTTGATCGATCGCCAAACATCTCTACTCAGGTGGGTTTCTTGGTTAACCTTGCCCTTGCCCGCCGTGTCTACACTAT
species | Arabidopsis thaliana |
transcript | AT5G03590.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
actcacggaaaaaagaaagttaaactaaacagaggaatgaattttgcgttcggagGGTCCGAAGTGTTTGACTCTCCGGTTGATCGATCGCCAAACATCTCTACTCAGGTGGGTTTCTTGGTTAACCTTGCCCTTGCCCGCCGTGTCTACACTAT
aactaaa putative branch site (score: 2)
aaaaaagaaagttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtgcagcaaaacagttgggagcaaaattaccgtacctctggagaactcacggaaaaaagaaagttaaactaaacagaggaatgaattttgcgttcggagGGTCCGAAGTGTTTGACTCTCCGGTTGATCGATCGCCAAACATCTCTACTCAGGTGGGTTTCTTGGTTAACCTTGCCCTTGCCCGCCGTGTCTACACTAT
- - -agcaaaa
- - - -caaaaca
- - - - - - - - - - - - - - - - - - - - - - aactcac
- - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaggaa