1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgataatctagcagtctggtcttggtttggtttaaggaagtctgttttgtcggatcttattggcattatattgttggtttaacataagtattactcatagGTGTTGATTTCAAGATCAAACAATTGACAGTAGGAGGCAAAAGGCTAAAACTCACAATCTGGGACACAG
species | Arabidopsis thaliana |
transcript | AT5G03530.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTTGTCAGCTTCATTTCTAGCTCCGTTGAAGATCTTGCTCCTACTATTG GTGTTGATTTCAAGATCAAACAATTGACAGTAGGAGGCAAAAGGEST: gi|124799401|gb|EH889080.1|EH889080
genomic: GCTTGTCAGCTTCATTTCTAGCTCCGTTGAAGATCTTGCTCCTACTATTGgtaaaatagt ... ttactcatagGTGTTGATTTCAAGATCAAACAATTGACAGTAGGAGGCAAAAGG
EST: CTTCATTTCTAGCTCCGTTGAAGATCTTGCTCCTACTATTG GTGTTGATTTCAAGATCAAACAATTAAGACAGTAGGAGGCAAAAGGCTAAA
genomic: CTTCATTTCTAGCTCCGTTGAAGATCTTGCTCCTACTATTGgtaaaatagt ... ttactcatagGTGTTGATTTCAAGATCAAACAATT--GACAGTAGGAGGCAAAAGGCTAAA
tttgtcggatcttattggcattatattgttggtttaacataagtattactcatagGTGTTGATTTCAAGATCAAACAATTGACAGTAGGAGGCAAAAGGCTAAAACTCACAATCTGGGACACAG
gtttaac putative branch site (score: 3)
tttaacataagtatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgataatctagcagtctggtcttggtttggtttaaggaagtctgttttgtcggatcttattggcattatattgttggtttaacataagtattactcatagGTGTTGATTTCAAGATCAAACAATTGACAGTAGGAGGCAAAAGGCTAAAACTCACAATCTGGGACACAG
- - - - - - - - - - - -ggtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacataa