1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtcagagaattacatgaactctatgttttgtttctgcaattcttcttttggttcgatgaaattttgaatactgtccgtaaagtttgacacttttatctgtttattttgctttgaagGTCTCACGGTTATTTGGGTATGAGGAAGTGGATTTTCCAGTACTGGAGACGGAGGCATTGTTCATCAGAAAAGCTGGGGAGGAGATTAGAGACCAA
species | Arabidopsis thaliana |
transcript | AT5G03406.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCCTGAGGATATGCGACTCCGCAACTGGCTCTTCAACCACTTCAAAGAG GTCTCACGGTTATTTGGGTATGAGGAAGTGGATTTTCCAGTACTGGAGACGEST: gi|116437280|gb|EG479872.1|EG479872
genomic: CTCCTGAGGATATGCGACTCCGCAACTGGCTCTTCAACCACTTCAAAGAGgtcagagaat ... tgctttgaagGTCTCACGGTTATTTGGGTATGAGGAAGTGGATTTTCCAGTACTGGAGACG
EST: CTCCTGAGGATATGCGACTCCGCAACTGGCTCTTCAACCACTTCAAAGAG GTCTCACGGTTATTTGGGTATGAEST: gi|116437277|gb|EG479869.1|EG479869
genomic: CTCCTGAGGATATGCGACTCCGCAACTGGCTCTTCAACCACTTCAAAGAGgtcagagaat ... tgctttgaagGTCTCACGGTTATTTGGGTATGA
EST: CTCCTGAGGATATGCGACTCCGCAACTGGCTCTTCAATCACTTCAAAGAG GTCTCACGGTTATTTGGGTATGAGGAAGTGGATTTTCCAGTACTGGAGACGEST: gi|116437263|gb|EG479855.1|EG479855
genomic: CTCCTGAGGATATGCGACTCCGCAACTGGCTCTTCAACCACTTCAAAGAGgtcagagaat ... tgctttgaagGTCTCACGGTTATTTGGGTATGAGGAAGTGGATTTTCCAGTACTGGAGACG
EST: CTCCTGAGGATATGCGACTCCGCAACTGGCTCTTCAACCACTTCAAAGAG GTCTCACGGTTATTTGGGTATGAGGAAGTGGATTTTCCAGTACTGGAGACGEST: gi|116437275|gb|EG479867.1|EG479867
genomic: CTCCTGAGGATATGCGACTCCGCAACTGGCTCTTCAACCACTTCAAAGAGgtcagagaat ... tgctttgaagGTCTCACGGTTATTTGGGTATGAGGAAGTGGATTTTCCAGTACTGGAGACG
EST: CTCCTGAGGATATGCGACTCCGCAACTGGCTCTTCAACCACTTCAAAGAG GTCTCACGGTTATTTGGGTATGAGGAAGTGGATTTTCCAGTACTGGAGACGEST: gi|116437276|gb|EG479868.1|EG479868
genomic: CTCCTGAGGATATGCGACTCCGCAACTGGCTCTTCAACCACTTCAAAGAGgtcagagaat ... tgctttgaagGTCTCACGGTTATTTGGGTATGAGGAAGTGGATTTTCCAGTACTGGAGACG
EST: CTCCTGAGGATATGCGACTCCGCAACTGGCTCTTCAATCACTTCAAAGAG GTCTCACGGTTATTTGGGTATGAGGAAGTGGATTTTCCAGTACTGGAGACGEST: gi|116437274|gb|EG479866.1|EG479866
genomic: CTCCTGAGGATATGCGACTCCGCAACTGGCTCTTCAACCACTTCAAAGAGgtcagagaat ... tgctttgaagGTCTCACGGTTATTTGGGTATGAGGAAGTGGATTTTCCAGTACTGGAGACG
EST: CTCCTGAGGATATGCGACTCCGCAACTGGCTCTTCAACCACTTCAAAGAG GTCTCACGGTTATTTGGGTATGAGGAAGTGGATTTTCCAGTACTGGAGACGEST: gi|116437267|gb|EG479859.1|EG479859
genomic: CTCCTGAGGATATGCGACTCCGCAACTGGCTCTTCAACCACTTCAAAGAGgtcagagaat ... tgctttgaagGTCTCACGGTTATTTGGGTATGAGGAAGTGGATTTTCCAGTACTGGAGACG
EST: CTCCTGAGGATATGCGACTCCGCAACTGGCTCTTCAACCACTTCAAAGAG GTCTCACGGTTATTTGGGTATGAGGAAGTGGATTTTCCAGTACTGGAGACGEST: gi|116437268|gb|EG479860.1|EG479860
genomic: CTCCTGAGGATATGCGACTCCGCAACTGGCTCTTCAACCACTTCAAAGAGgtcagagaat ... tgctttgaagGTCTCACGGTTATTTGGGTATGAGGAAGTGGATTTTCCAGTACTGGAGACG
EST: CTCCTGAGGATATGCGACTCCGCAACTGGCTCTTCAACCACTTCAAAGAG GTCTCACGGTTATTTGGGTATGAGGAAGTGGATTTTCCAGTACTGGAGACGEST: gi|116437284|gb|EG479876.1|EG479876
genomic: CTCCTGAGGATATGCGACTCCGCAACTGGCTCTTCAACCACTTCAAAGAGgtcagagaat ... tgctttgaagGTCTCACGGTTATTTGGGTATGAGGAAGTGGATTTTCCAGTACTGGAGACG
EST: CTCCTGAGGATATGCGACTCCGCAACTGGCTCTTCAACCACTTCAAAGAG GTCTCACGGTTATTTGGGTATGAGGAAGTGGATTTTCCAGTACTGGAGACGEST: gi|116437281|gb|EG479873.1|EG479873
genomic: CTCCTGAGGATATGCGACTCCGCAACTGGCTCTTCAACCACTTCAAAGAGgtcagagaat ... tgctttgaagGTCTCACGGTTATTTGGGTATGAGGAAGTGGATTTTCCAGTACTGGAGACG
EST: CTCCTGAGGATATGCGACTCCGCAACTGGCTCTTCAACCACTTCAAAGAG GTCTCACGGTTATTTGGGTATGAGGAAGTGGATTTTCCAGTACTGGAGACG
genomic: CTCCTGAGGATATGCGACTCCGCAACTGGCTCTTCAACCACTTCAAAGAGgtcagagaat ... tgctttgaagGTCTCACGGTTATTTGGGTATGAGGAAGTGGATTTTCCAGTACTGGAGACG
ttttgaatactgtccgtaaagtttgacacttttatctgtttattttgctttgaagGTCTCACGGTTATTTGGGTATGAGGAAGTGGATTTTCCAGTACTGGAGACGGAGGCATTGTTCATCAGAAAAGCTGGGGAGGAGATTAGAGACCAA
gtttgac putative branch site (score: 4)
ttttgcttt putative PPT
ttttatctgtttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagagaattacatgaactctatgttttgtttctgcaattcttcttttggttcgatgaaattttgaatactgtccgtaaagtttgacacttttatctgtttattttgctttgaagGTCTCACGGTTATTTGGGTATGAGGAAGTGGATTTTCCAGTACTGGAGACGGAGGCATTGTTCATCAGAAAAGCTGGGGAGGAGATTAGAGACCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT