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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatactatatcaattcttgctgttacactgtgactatgaactcttgaattgattacctgcttcttatttcagGTCTCGGATTCAAAATCAAAGAGTTGGTGGATCCTTTTGATGTTGTAAAGAGTTGTGTTGAAATTTCCAATCCTCAATTAGCTATTAG

Basic information

species Arabidopsis thaliana
transcript AT5G02830.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116444092|gb|EG486684.1|EG486684
EST:     TAACTCTGTGCAAGTGGAGAAAGCTATTGATCTAATGGAGATACTTGCCG                         GTCTCGGATTCAAAATCAAAGAGTTGGTGGATCCTTTTGATGTTGTAAAGA
genomic: TAACTCTGTGCAAGTGGAGAAAGCTATTGATCTAATGGAGATACTTGCCGgtaaatacta ... cttatttcagGTCTCGGATTCAAAATCAAAGAGTTGGTGGATCCTTTTGATGTTGTAAAGA
EST: gi|19877535|gb|AU238366.1|AU238366
EST:     TAACTCTGTGCAAGTGGAGAAAGCTATTGATCTAATGGAGATACTTGCCG                         GTCTCGGATTCAAAATCAAAGA
genomic: TAACTCTGTGCAAGTGGAGAAAGCTATTGATCTAATGGAGATACTTGCCGgtaaatacta ... cttatttcagGTCTCGGATTCAAAATCAAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctgttacactgtgactatgaactcttgaattgattacctgcttcttatttcagGTCTCGGATTCAAAATCAAAGAGTTGGTGGATCCTTTTGATGTTGTAAAGAGTTGTGTTGAAATTTCCAATCCTCAATTAGCTATTAG
                             aattgat  putative branch site (score: 4)
                                      cctgcttcttatttc  putative PPT
                             aattgatta  TA-rich tract