Sequence
atgc intronic sequence ATGC exonic sequencegtaattccttccctccttgaccattcccctctttcaatttcactttttcctttttcaaaattcatgcagtttccttgtgaatcagGTTTTGAGTGATCCTCAGAAACGAGCAATCTACGAGCAATACGGAGAAGAAGGTTTAAACCAAGCCCCACCTCCCGGCGCCGGTGGTGGCTATCCTGGAG
Basic information
species | Arabidopsis thaliana |
transcript | AT5G01390.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|152034024|gb|AU239893.2|AU239893EST: ACAAAAAAGAAGCCGAAGCTAAATTCAAGCAGATCTCTGAAGCTTACGAT GTTTTGAGTGATCCTCAGAAACGAGCAATCTACGAGCAATACGGAGAAGAA
genomic: ACAAAAAAGAAGCCGAAGCTAAATTCAAGCAGATCTCTGAAGCTTACGATgtaattcctt ... tgtgaatcagGTTTTGAGTGATCCTCAGAAACGAGCAATCTACGAGCAATACGGAGAAGAA
EST:
gi|125094151|gb|EL151690.1|EL151690EST: CAAAAAAGAAGCCGAAGCTAAATTCAAGCAGATCTCTGAAGCTTACGAT GTTTTGAGTGATCCTCAGAAACGAGCAATCTACGAGCAATACGGAGAAGAA
genomic: CAAAAAAGAAGCCGAAGCTAAATTCAAGCAGATCTCTGAAGCTTACGATgtaattcctt ... tgtgaatcagGTTTTGAGTGATCCTCAGAAACGAGCAATCTACGAGCAATACGGAGAAGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttcaatttcactttttcctttttcaaaattcatgcagtttccttgtgaatcagGTTTTGAGTGATCCTCAGAAACGAGCAATCTACGAGCAATACGGAGAAGAAGGTTTAAACCAAGCCCCACCTCCCGGCGCCGGTGGTGGCTATCCTGGAG
tttccttgt CT-rich tract
tttttcaaaattcat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaattccttccctccttgaccattcccctctttcaatttcactttttcctttttcaaaattcatgcagtttccttgtgaatcagGTTTTGAGTGATCCTCAGAAACGAGCAATCTACGAGCAATACGGAGAAGAAGGTTTAAACCAAGCCCCACCTCCCGGCGCCGGTGGTGGCTATCCTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG